Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   AAX09_RS06830 Genome accession   NZ_CP011374
Coordinates   1506290..1507618 (-) Length   442 a.a.
NCBI ID   WP_080947327.1    Uniprot ID   -
Organism   Moraxella bovoculi strain 58069     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1501290..1512618
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAX09_RS06800 (AAX09_06800) - 1501755..1502249 (+) 495 WP_046698460.1 Dps family protein -
  AAX09_RS06805 (AAX09_06805) gloA 1502298..1502831 (-) 534 WP_406564556.1 lactoylglutathione lyase -
  AAX09_RS06810 (AAX09_06810) - 1502853..1503476 (-) 624 WP_046701226.1 carbonic anhydrase -
  AAX09_RS06815 (AAX09_06815) - 1503488..1504414 (-) 927 WP_080947326.1 hypothetical protein -
  AAX09_RS06820 (AAX09_06820) aroB 1504466..1505581 (-) 1116 WP_046701227.1 3-dehydroquinate synthase -
  AAX09_RS06825 (AAX09_06825) - 1505607..1506200 (-) 594 WP_046701705.1 shikimate kinase -
  AAX09_RS06830 (AAX09_06830) pilQ 1506290..1507618 (-) 1329 WP_080947327.1 type IV pilus secretin PilQ Machinery gene
  AAX09_RS10795 - 1507632..1508258 (-) 627 WP_080947328.1 pilus assembly protein PilP -
  AAX09_RS06840 (AAX09_06840) - 1508251..1508907 (-) 657 WP_046701228.1 type 4a pilus biogenesis protein PilO -
  AAX09_RS06845 (AAX09_06845) - 1508904..1509533 (-) 630 WP_046701229.1 PilN domain-containing protein -
  AAX09_RS06850 (AAX09_06850) pilM 1509526..1510782 (-) 1257 WP_046701230.1 type IV pilus biogenesis protein PilM -
  AAX09_RS06855 (AAX09_06855) - 1510815..1511099 (-) 285 WP_046701231.1 hypothetical protein -

Sequence

Protein


Download         Length: 442 a.a.        Molecular weight: 47870.66 Da        Isoelectric Point: 6.1091

>NTDB_id=145231 AAX09_RS06830 WP_080947327.1 1506290..1507618(-) (pilQ) [Moraxella bovoculi strain 58069]
MKKWPVLMLMLITMVGAAHATSAPAQQYQGERISVEFQDMPVRAVIDVLAHAGGANIVASDGVTGNITLRLNNIPWDQAL
DIVVDTKHLIKTLNNGVITISSPDELTQISQRRAQARIQSQQHLPLQTEYIRINYADAKDILSLINHKADASSSAAMLSD
RGVANMDNRTNTLIIKDIQPNIDDILALVSRLDVPVQQVMIEARIVSANDGFSRDLGVSFGVLSNSNRLQIGGSHNALWH
LRSSNNGSTNITRPDHLAVDLGVANPAGRIAFGLINISDVLLDLELSAMQADRRGEVISTPKVLTADKKTARISSGMQIA
YQEETSSGATNTVFKEAALVLEATPTITPDGKITLKLNVKNGTPVTNLGEIAIQEDALETNVIVDDGQTVVLGGIYRQTN
NNGVIKVPFFGDLPVVGKLFRKESRSDTKEELLIFVTPKLVQ

Nucleotide


Download         Length: 1329 bp        

>NTDB_id=145231 AAX09_RS06830 WP_080947327.1 1506290..1507618(-) (pilQ) [Moraxella bovoculi strain 58069]
ATGAAAAAATGGCCTGTATTAATGCTGATGCTAATCACAATGGTGGGCGCTGCCCATGCGACATCTGCACCAGCTCAGCA
ATATCAAGGTGAGCGCATCTCCGTCGAATTTCAAGACATGCCTGTGCGTGCGGTTATCGATGTCCTGGCGCATGCAGGCG
GTGCTAATATCGTGGCAAGCGATGGTGTGACAGGAAATATCACCTTAAGATTAAATAACATCCCGTGGGATCAGGCACTT
GACATCGTCGTCGATACCAAGCACCTCATCAAAACCTTGAATAATGGCGTTATTACCATCTCATCGCCAGATGAACTGAC
GCAAATCTCCCAACGCCGCGCCCAAGCACGAATTCAGTCCCAGCAGCATTTGCCACTACAGACCGAATATATCCGCATCA
ATTATGCCGACGCCAAGGATATTTTATCACTGATCAATCATAAGGCTGATGCTTCATCAAGTGCTGCCATGCTGTCAGAT
CGCGGTGTGGCAAACATGGATAATCGTACAAACACACTTATTATTAAAGACATCCAGCCGAATATCGATGACATATTGGC
ATTGGTGTCGCGCCTTGATGTGCCGGTGCAGCAGGTGATGATTGAGGCGAGGATTGTGAGTGCTAATGACGGCTTTAGTC
GTGATCTTGGGGTGAGCTTTGGAGTGTTATCAAACAGCAATCGCTTACAGATTGGCGGGTCTCATAATGCGCTCTGGCAC
CTAAGGTCGTCAAATAATGGATCGACTAACATCACACGCCCTGACCATCTGGCGGTTGATCTGGGTGTGGCGAACCCGGC
GGGCCGCATAGCATTTGGTCTTATCAATATATCAGACGTATTGCTTGATTTGGAATTGTCTGCCATGCAGGCTGATCGTC
GTGGTGAAGTCATCTCAACGCCAAAAGTGTTAACCGCTGATAAGAAAACAGCGCGCATCTCATCAGGCATGCAAATCGCC
TACCAAGAAGAGACATCAAGTGGCGCAACCAACACAGTATTTAAAGAGGCGGCGCTTGTGTTGGAGGCCACGCCAACCAT
CACGCCAGATGGTAAAATTACCCTAAAATTAAACGTCAAAAACGGCACGCCTGTCACCAATCTAGGCGAGATTGCCATCC
AAGAAGATGCTTTGGAGACTAATGTCATCGTCGATGATGGCCAGACTGTCGTGCTGGGTGGTATTTATCGTCAAACCAAT
AATAATGGCGTAATTAAAGTGCCGTTCTTTGGTGATTTGCCCGTGGTCGGAAAATTATTCCGCAAAGAAAGTCGTAGCGA
CACCAAAGAGGAACTTTTGATTTTTGTTACCCCAAAATTGGTGCAATAA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(288-442)

Bacterial type II/III secretion system short domain (Secretin_N)

(129-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii strain A118

48.791

100

0.502
  pilQ Acinetobacter baumannii D1279779

48.791

100

0.502
  comQ Acinetobacter baylyi ADP1

49.438

100

0.498
  pilQ Legionella pneumophila strain ERS1305867

42.523

96.833

0.412
  pilQ Vibrio campbellii strain DS40M4

42.155

96.606

0.407
  pilQ Legionella pneumophila strain Lp02

41.844

95.701

0.4
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

41.549

96.38

0.4
  pilQ Vibrio cholerae strain A1552

41.549

96.38

0.4
  pilQ Pseudomonas aeruginosa PAK

39.498

99.095

0.391

Multiple sequence alignment