Detailed information
Bioinformatically predicted
Overview
| Name | cinA | Type | Machinery gene |
| Locus tag | XM40_RS08245 | Genome accession | NZ_CP011278 |
| Coordinates | 1665072..1666322 (+) | Length | 416 a.a. |
| NCBI ID | WP_043867100.1 | Uniprot ID | - |
| Organism | Bacillus velezensis strain L-S60 | ||
| Function | unknown (predicted from homology) Unclear |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1645988..1703067 | 1665072..1666322 | within | 0 |
Gene organization within MGE regions
Location: 1645988..1703067
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| XM40_RS08165 (XM40_08165) | dapA | 1646594..1647463 (+) | 870 | WP_003154166.1 | 4-hydroxy-tetrahydrodipicolinate synthase | - |
| XM40_RS08170 (XM40_08170) | rnjB | 1647642..1649309 (+) | 1668 | WP_003154163.1 | ribonuclease J2 | - |
| XM40_RS08175 (XM40_08175) | - | 1649425..1650162 (+) | 738 | WP_003154162.1 | ClpP family protease | - |
| XM40_RS08180 (XM40_08180) | - | 1650159..1650368 (+) | 210 | WP_003154161.1 | YlzJ-like family protein | - |
| XM40_RS08185 (XM40_08185) | - | 1650503..1652863 (+) | 2361 | WP_015388225.1 | DNA translocase FtsK | - |
| XM40_RS08190 (XM40_08190) | - | 1652988..1653713 (+) | 726 | WP_003154159.1 | GntR family transcriptional regulator | - |
| XM40_RS08195 (XM40_08195) | - | 1653825..1655054 (+) | 1230 | WP_003154158.1 | MFS transporter | - |
| XM40_RS08200 (XM40_08200) | - | 1655161..1655616 (+) | 456 | WP_003154157.1 | MarR family transcriptional regulator | - |
| XM40_RS08205 (XM40_08205) | - | 1655616..1658735 (+) | 3120 | WP_043867097.1 | MMPL family transporter | - |
| XM40_RS08210 (XM40_08210) | - | 1658887..1660167 (+) | 1281 | WP_014305019.1 | pitrilysin family protein | - |
| XM40_RS08215 (XM40_08215) | - | 1660164..1661450 (+) | 1287 | WP_025851236.1 | pitrilysin family protein | - |
| XM40_RS08220 (XM40_08220) | - | 1661509..1662237 (+) | 729 | WP_043867098.1 | SDR family oxidoreductase | - |
| XM40_RS08225 (XM40_08225) | - | 1662313..1662570 (+) | 258 | WP_003154150.1 | DUF3243 domain-containing protein | - |
| XM40_RS08230 (XM40_08230) | - | 1662698..1663489 (+) | 792 | WP_003154149.1 | YmfK family protein | - |
| XM40_RS08235 (XM40_08235) | - | 1663508..1664398 (+) | 891 | WP_043867099.1 | RodZ domain-containing protein | - |
| XM40_RS08240 (XM40_08240) | pgsA | 1664473..1665054 (+) | 582 | WP_003154147.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| XM40_RS08245 (XM40_08245) | cinA | 1665072..1666322 (+) | 1251 | WP_043867100.1 | competence/damage-inducible protein A | Machinery gene |
| XM40_RS08250 (XM40_08250) | recA | 1666493..1667536 (+) | 1044 | WP_003154145.1 | recombinase RecA | Machinery gene |
| XM40_RS08255 (XM40_08255) | - | 1667705..1668886 (+) | 1182 | WP_003154142.1 | serine hydrolase domain-containing protein | - |
| XM40_RS08260 (XM40_08260) | rny | 1669179..1670738 (+) | 1560 | WP_003154140.1 | ribonuclease Y | - |
| XM40_RS08265 (XM40_08265) | - | 1670799..1671593 (+) | 795 | WP_003154137.1 | TIGR00282 family metallophosphoesterase | - |
| XM40_RS08270 (XM40_08270) | spoVS | 1671793..1672053 (+) | 261 | WP_003154135.1 | stage V sporulation protein SpoVS | - |
| XM40_RS08275 (XM40_08275) | tdh | 1672312..1673358 (+) | 1047 | WP_043867101.1 | L-threonine 3-dehydrogenase | - |
| XM40_RS08280 (XM40_08280) | - | 1673371..1674549 (+) | 1179 | WP_088037143.1 | glycine C-acetyltransferase | - |
| XM40_RS08285 (XM40_08285) | miaB | 1674692..1676221 (+) | 1530 | WP_003154116.1 | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | - |
| XM40_RS08290 (XM40_08290) | - | 1676224..1676655 (+) | 432 | WP_003154113.1 | RicAFT regulatory complex protein RicA family protein | - |
| XM40_RS08295 (XM40_08295) | cotE | 1676909..1677454 (+) | 546 | WP_003154111.1 | outer spore coat protein CotE | - |
| XM40_RS08300 (XM40_08300) | mutS | 1677573..1680158 (+) | 2586 | WP_003154108.1 | DNA mismatch repair protein MutS | - |
| XM40_RS08305 (XM40_08305) | mutL | 1680174..1682051 (+) | 1878 | WP_003154106.1 | DNA mismatch repair endonuclease MutL | - |
| XM40_RS08310 (XM40_08310) | - | 1682104..1683219 (-) | 1116 | WP_043867102.1 | site-specific integrase | - |
| XM40_RS08315 (XM40_08315) | - | 1683520..1684701 (+) | 1182 | WP_043867633.1 | AimR family lysis-lysogeny pheromone receptor | - |
| XM40_RS08320 (XM40_08320) | - | 1685073..1685462 (-) | 390 | WP_043867103.1 | helix-turn-helix transcriptional regulator | - |
| XM40_RS08330 (XM40_08330) | - | 1685903..1686220 (+) | 318 | WP_043867105.1 | hypothetical protein | - |
| XM40_RS08335 (XM40_08335) | - | 1686233..1686457 (+) | 225 | WP_043867106.1 | hypothetical protein | - |
| XM40_RS08340 (XM40_08340) | - | 1686444..1687316 (+) | 873 | WP_043867107.1 | phage replisome organizer N-terminal domain-containing protein | - |
| XM40_RS08345 (XM40_08345) | - | 1687243..1688133 (+) | 891 | WP_240903262.1 | ATP-binding protein | - |
| XM40_RS19840 | - | 1688148..1688297 (+) | 150 | WP_017417259.1 | hypothetical protein | - |
| XM40_RS19845 | - | 1688294..1688452 (+) | 159 | WP_163104070.1 | hypothetical protein | - |
| XM40_RS08350 (XM40_08350) | - | 1688449..1688997 (+) | 549 | WP_043867108.1 | hypothetical protein | - |
| XM40_RS19850 | - | 1688966..1689133 (+) | 168 | WP_163104071.1 | hypothetical protein | - |
| XM40_RS19650 | - | 1689106..1689246 (+) | 141 | WP_015387918.1 | BH0509 family protein | - |
| XM40_RS19855 | - | 1689259..1689414 (+) | 156 | WP_163104072.1 | hypothetical protein | - |
| XM40_RS08355 (XM40_08355) | - | 1689494..1689697 (+) | 204 | WP_014721584.1 | XtrA/YqaO family protein | - |
| XM40_RS08360 (XM40_08360) | - | 1689838..1690218 (+) | 381 | WP_043867109.1 | hypothetical protein | - |
| XM40_RS08365 (XM40_08365) | - | 1690215..1690592 (+) | 378 | WP_043867110.1 | YopX family protein | - |
| XM40_RS08375 (XM40_08375) | - | 1690813..1691070 (+) | 258 | WP_043867112.1 | hypothetical protein | - |
| XM40_RS08380 (XM40_08380) | - | 1691075..1691899 (+) | 825 | WP_043867113.1 | DNA adenine methylase | - |
| XM40_RS08385 (XM40_08385) | - | 1691896..1692735 (+) | 840 | WP_043867114.1 | phosphoadenosine phosphosulfate reductase family protein | - |
| XM40_RS08390 (XM40_08390) | - | 1692817..1693230 (+) | 414 | WP_043867115.1 | hypothetical protein | - |
| XM40_RS08395 (XM40_08395) | - | 1693374..1693724 (-) | 351 | WP_017417491.1 | Ig-like domain-containing protein | - |
| XM40_RS08400 (XM40_08400) | - | 1693833..1694267 (+) | 435 | WP_043867116.1 | hypothetical protein | - |
| XM40_RS19860 | - | 1694373..1694549 (+) | 177 | WP_163104073.1 | hypothetical protein | - |
| XM40_RS08405 (XM40_08405) | - | 1694604..1695056 (+) | 453 | WP_043867635.1 | ArpU family phage packaging/lysis transcriptional regulator | - |
| XM40_RS08410 (XM40_08410) | - | 1695053..1695595 (+) | 543 | WP_038458303.1 | tyrosine-type recombinase/integrase | - |
| XM40_RS08415 (XM40_08415) | - | 1695824..1697086 (+) | 1263 | WP_043867117.1 | hypothetical protein | - |
| XM40_RS08420 (XM40_08420) | - | 1697376..1697669 (+) | 294 | WP_043867118.1 | hypothetical protein | - |
| XM40_RS08425 (XM40_08425) | - | 1697737..1698630 (+) | 894 | WP_043867119.1 | hypothetical protein | - |
| XM40_RS08430 (XM40_08430) | - | 1698736..1699092 (+) | 357 | WP_046376718.1 | hypothetical protein | - |
| XM40_RS08435 (XM40_08435) | - | 1699110..1700405 (+) | 1296 | WP_043867120.1 | PIN domain-containing protein | - |
| XM40_RS19180 (XM40_08440) | - | 1700454..1700819 (+) | 366 | WP_043867121.1 | HNH endonuclease | - |
| XM40_RS08445 (XM40_08445) | - | 1701047..1701562 (+) | 516 | WP_014418488.1 | phage terminase small subunit P27 family | - |
Sequence
Protein
Download Length: 416 a.a. Molecular weight: 45106.44 Da Isoelectric Point: 5.3789
>NTDB_id=144115 XM40_RS08245 WP_043867100.1 1665072..1666322(+) (cinA) [Bacillus velezensis strain L-S60]
MEIAKKAEIIAVGSELLLGQIANTNAQFISKELAEIGVNVFYHTAVGDNPERLKQVIRIAEERSDLIIFSGGLGPTKDDL
TKETIANTLGRPLVLNDEAFRSIEEYFAKTKRTMSPNNRKQALVIEGSDVLANHFGMAPGMLAEHGSRLYMLLPGPPSEL
RPMFENEAKPLLLKKLGSNEKIVSTVLRFFGIGESQLEADLEDIIDAQTNPTIAPLAADGEVTLRLTAKHADEKETERLL
KETEAAILERVGEFFYGYDDTSLVKELSKACRQNKITISSAESFTGGLFSEWVTDLSGASQLFAGGVVCYSDSVKQHVLG
VKAETLAESGAVSKECAKELAAGVRKLTGSDIGISFTGVAGPDPQEGHAPGRVFIGISAEGKEEVHEFHFAGSRTGIRKR
AAKYGCHLILKMLDQK
MEIAKKAEIIAVGSELLLGQIANTNAQFISKELAEIGVNVFYHTAVGDNPERLKQVIRIAEERSDLIIFSGGLGPTKDDL
TKETIANTLGRPLVLNDEAFRSIEEYFAKTKRTMSPNNRKQALVIEGSDVLANHFGMAPGMLAEHGSRLYMLLPGPPSEL
RPMFENEAKPLLLKKLGSNEKIVSTVLRFFGIGESQLEADLEDIIDAQTNPTIAPLAADGEVTLRLTAKHADEKETERLL
KETEAAILERVGEFFYGYDDTSLVKELSKACRQNKITISSAESFTGGLFSEWVTDLSGASQLFAGGVVCYSDSVKQHVLG
VKAETLAESGAVSKECAKELAAGVRKLTGSDIGISFTGVAGPDPQEGHAPGRVFIGISAEGKEEVHEFHFAGSRTGIRKR
AAKYGCHLILKMLDQK
Nucleotide
Download Length: 1251 bp
>NTDB_id=144115 XM40_RS08245 WP_043867100.1 1665072..1666322(+) (cinA) [Bacillus velezensis strain L-S60]
ATGGAAATAGCAAAAAAAGCAGAAATCATTGCGGTCGGCTCGGAGCTTCTGCTCGGCCAGATCGCCAATACGAACGCGCA
GTTTATCAGTAAAGAGCTGGCGGAAATCGGTGTAAACGTGTTTTACCATACCGCTGTCGGTGACAATCCGGAGCGGCTTA
AGCAAGTCATCCGCATTGCCGAAGAGCGCTCAGACCTGATTATTTTTTCAGGCGGTCTCGGACCGACCAAGGACGATTTG
ACGAAAGAAACCATTGCAAACACACTGGGGCGCCCGCTCGTTCTGAATGACGAAGCGTTCCGGTCGATCGAAGAATATTT
CGCGAAAACAAAACGGACCATGTCGCCGAATAACCGCAAACAGGCGCTCGTCATTGAGGGCTCGGACGTTTTGGCGAATC
ATTTCGGTATGGCACCGGGAATGCTTGCAGAGCACGGCTCAAGGCTTTATATGCTGCTTCCCGGGCCGCCGAGCGAGCTG
CGTCCGATGTTTGAAAATGAAGCGAAACCGCTGCTTCTTAAAAAGCTTGGTTCTAATGAGAAAATCGTTTCAACCGTGCT
GCGGTTTTTCGGAATCGGTGAATCCCAGCTTGAAGCTGATTTAGAAGATATCATTGACGCGCAGACGAATCCGACGATTG
CGCCGCTTGCTGCTGACGGCGAGGTCACGCTGCGTTTAACGGCGAAACATGCTGACGAAAAAGAAACAGAACGGCTTTTA
AAAGAAACGGAAGCCGCCATTTTAGAACGTGTCGGTGAATTTTTCTACGGATATGATGATACGTCCCTGGTGAAGGAGCT
TTCAAAAGCATGCAGACAAAACAAAATCACGATTTCTTCTGCCGAAAGCTTTACAGGCGGCCTGTTTTCAGAGTGGGTGA
CTGATTTAAGCGGTGCGTCTCAACTATTTGCAGGAGGCGTTGTCTGCTATTCCGACAGCGTGAAACAGCATGTGCTCGGC
GTGAAAGCTGAGACGCTCGCAGAAAGCGGAGCGGTCAGCAAAGAGTGTGCGAAAGAGCTTGCAGCCGGTGTGAGAAAGCT
GACCGGAAGCGATATCGGCATCAGCTTTACCGGGGTCGCGGGTCCCGACCCGCAGGAAGGGCATGCGCCGGGCCGCGTCT
TTATCGGCATTTCAGCGGAAGGAAAAGAAGAGGTGCACGAATTTCACTTTGCCGGCTCAAGAACCGGAATCAGAAAGCGC
GCCGCTAAATACGGCTGCCATCTCATTTTAAAAATGCTGGATCAAAAATAA
ATGGAAATAGCAAAAAAAGCAGAAATCATTGCGGTCGGCTCGGAGCTTCTGCTCGGCCAGATCGCCAATACGAACGCGCA
GTTTATCAGTAAAGAGCTGGCGGAAATCGGTGTAAACGTGTTTTACCATACCGCTGTCGGTGACAATCCGGAGCGGCTTA
AGCAAGTCATCCGCATTGCCGAAGAGCGCTCAGACCTGATTATTTTTTCAGGCGGTCTCGGACCGACCAAGGACGATTTG
ACGAAAGAAACCATTGCAAACACACTGGGGCGCCCGCTCGTTCTGAATGACGAAGCGTTCCGGTCGATCGAAGAATATTT
CGCGAAAACAAAACGGACCATGTCGCCGAATAACCGCAAACAGGCGCTCGTCATTGAGGGCTCGGACGTTTTGGCGAATC
ATTTCGGTATGGCACCGGGAATGCTTGCAGAGCACGGCTCAAGGCTTTATATGCTGCTTCCCGGGCCGCCGAGCGAGCTG
CGTCCGATGTTTGAAAATGAAGCGAAACCGCTGCTTCTTAAAAAGCTTGGTTCTAATGAGAAAATCGTTTCAACCGTGCT
GCGGTTTTTCGGAATCGGTGAATCCCAGCTTGAAGCTGATTTAGAAGATATCATTGACGCGCAGACGAATCCGACGATTG
CGCCGCTTGCTGCTGACGGCGAGGTCACGCTGCGTTTAACGGCGAAACATGCTGACGAAAAAGAAACAGAACGGCTTTTA
AAAGAAACGGAAGCCGCCATTTTAGAACGTGTCGGTGAATTTTTCTACGGATATGATGATACGTCCCTGGTGAAGGAGCT
TTCAAAAGCATGCAGACAAAACAAAATCACGATTTCTTCTGCCGAAAGCTTTACAGGCGGCCTGTTTTCAGAGTGGGTGA
CTGATTTAAGCGGTGCGTCTCAACTATTTGCAGGAGGCGTTGTCTGCTATTCCGACAGCGTGAAACAGCATGTGCTCGGC
GTGAAAGCTGAGACGCTCGCAGAAAGCGGAGCGGTCAGCAAAGAGTGTGCGAAAGAGCTTGCAGCCGGTGTGAGAAAGCT
GACCGGAAGCGATATCGGCATCAGCTTTACCGGGGTCGCGGGTCCCGACCCGCAGGAAGGGCATGCGCCGGGCCGCGTCT
TTATCGGCATTTCAGCGGAAGGAAAAGAAGAGGTGCACGAATTTCACTTTGCCGGCTCAAGAACCGGAATCAGAAAGCGC
GCCGCTAAATACGGCTGCCATCTCATTTTAAAAATGCTGGATCAAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| cinA | Bacillus subtilis subsp. subtilis str. 168 |
90.385 |
100 |
0.904 |
| cinA | Streptococcus mitis NCTC 12261 |
47.368 |
100 |
0.476 |
| cinA | Streptococcus mitis SK321 |
46.89 |
100 |
0.471 |
| cinA | Streptococcus pneumoniae TIGR4 |
46.411 |
100 |
0.466 |
| cinA | Streptococcus pneumoniae Rx1 |
46.411 |
100 |
0.466 |
| cinA | Streptococcus pneumoniae R6 |
46.411 |
100 |
0.466 |
| cinA | Streptococcus pneumoniae D39 |
46.172 |
100 |
0.464 |
| cinA | Streptococcus mutans UA159 |
46.247 |
99.279 |
0.459 |
| cinA | Streptococcus suis isolate S10 |
40.921 |
93.99 |
0.385 |