Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   WQ53_RS11530 Genome accession   NZ_CP011144
Coordinates   2784536..2785798 (-) Length   420 a.a.
NCBI ID   WP_052632537.1    Uniprot ID   A0A0E3UNW2
Organism   Pseudoxanthomonas suwonensis strain J1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 2781927..2792089 2784536..2785798 within 0


Gene organization within MGE regions


Location: 2781927..2792089
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WQ53_RS11505 (WQ53_11575) - 2781927..2782166 (-) 240 WP_201774012.1 hypothetical protein -
  WQ53_RS11510 (WQ53_11580) - 2782201..2782497 (-) 297 WP_052632529.1 BrnT family toxin -
  WQ53_RS11515 (WQ53_11585) - 2782758..2783069 (+) 312 WP_052632531.1 type II toxin-antitoxin system HigB family toxin -
  WQ53_RS11520 (WQ53_11590) - 2783084..2783497 (+) 414 WP_052632533.1 transcriptional regulator -
  WQ53_RS11525 (WQ53_11595) - 2783654..2784517 (-) 864 WP_052632535.1 A24 family peptidase -
  WQ53_RS11530 (WQ53_11600) pilC 2784536..2785798 (-) 1263 WP_052632537.1 type II secretion system F family protein Machinery gene
  WQ53_RS11535 (WQ53_11605) - 2786399..2786818 (+) 420 WP_052632539.1 pilin -
  WQ53_RS11540 (WQ53_11610) - 2786945..2787352 (+) 408 WP_052632541.1 pilin -
  WQ53_RS11545 (WQ53_11615) - 2787421..2789355 (+) 1935 WP_144409315.1 hypothetical protein -
  WQ53_RS11550 (WQ53_11620) - 2789382..2790029 (-) 648 WP_052632545.1 hypothetical protein -
  WQ53_RS11555 (WQ53_11625) - 2790026..2790973 (-) 948 WP_052632547.1 hypothetical protein -
  WQ53_RS16435 (WQ53_11630) - 2791034..2792089 (-) 1056 WP_082113001.1 UDP-N-acetylglucosamine 2-epimerase -

Sequence

Protein


Download         Length: 420 a.a.        Molecular weight: 45562.73 Da        Isoelectric Point: 10.0276

>NTDB_id=142701 WQ53_RS11530 WP_052632537.1 2784536..2785798(-) (pilC) [Pseudoxanthomonas suwonensis strain J1]
MSATRSAVKKTVPVDRATSQLVPFVWEGTDKRGVKMKGEQPAKNANLLKAELRRQGITPSVVKPKAKPLFGAAGRTISAK
DIAFFSRQMATMMKSGVPIVSALEIIGGGQKNPRMKSMIDDIRTNIEGGSSMHEAISRHPVQFDELFRNLVRAGEGAGVL
ETVLDTIASYKENIESLKGKIKKALFYPAMTIAVAIIVSAILLIYVVPQFEAVFAGFGAELPAFTKLIVAASDFMVSYWW
MMLLIVGGGLFASVFFYKRSPAFQHFLDRVILKVPVLGQIMHQSAIARFARTTAVTFKAGVPLVEALESVAGATGNTVYE
KAVYRIRDDVAVGYPVNLAMKQTNLFPNMVIQMTAIGEEAGALDTMLFKVAEYYEQEVNNAVDALASLIEPLIMVVLGVL
VGGMVVGMYLPIFKLAATIG

Nucleotide


Download         Length: 1263 bp        

>NTDB_id=142701 WQ53_RS11530 WP_052632537.1 2784536..2785798(-) (pilC) [Pseudoxanthomonas suwonensis strain J1]
ATGTCCGCGACCCGCAGTGCCGTGAAGAAGACCGTGCCCGTCGACCGGGCCACCAGCCAGCTGGTGCCCTTCGTCTGGGA
GGGCACCGACAAGCGCGGCGTCAAGATGAAGGGCGAGCAGCCGGCCAAGAACGCCAACCTGCTCAAGGCCGAACTGCGCC
GCCAGGGCATCACCCCCAGCGTGGTCAAGCCCAAGGCCAAGCCGCTGTTCGGCGCGGCCGGCCGCACTATCTCGGCCAAG
GACATCGCCTTTTTCAGCCGGCAGATGGCCACGATGATGAAGTCCGGCGTGCCGATCGTGTCGGCTCTCGAGATCATCGG
CGGCGGCCAGAAGAACCCGCGGATGAAGTCGATGATCGACGACATCCGCACCAACATCGAGGGCGGCTCCTCGATGCACG
AAGCGATCAGCCGCCACCCTGTGCAGTTCGACGAACTGTTCCGCAACCTGGTCCGCGCCGGCGAGGGAGCCGGCGTGCTG
GAAACGGTGCTGGACACCATCGCCAGCTACAAGGAGAACATCGAGTCGCTCAAGGGCAAGATCAAGAAGGCCCTGTTCTA
CCCGGCCATGACGATCGCGGTGGCGATCATCGTCAGCGCGATCCTGCTGATCTACGTGGTGCCGCAGTTCGAGGCGGTAT
TTGCCGGTTTCGGCGCCGAACTGCCGGCGTTCACCAAACTGATCGTCGCCGCCTCGGACTTCATGGTGTCCTACTGGTGG
ATGATGCTGCTGATCGTGGGCGGCGGCCTGTTCGCCTCGGTGTTCTTCTACAAGCGCTCGCCCGCGTTCCAGCACTTCCT
GGACCGGGTGATCCTCAAGGTGCCGGTGCTGGGCCAGATCATGCACCAGAGCGCCATTGCCCGCTTTGCCCGCACCACCG
CGGTGACCTTCAAGGCCGGCGTGCCGCTGGTGGAGGCGCTGGAATCGGTGGCCGGCGCCACCGGCAATACCGTGTACGAG
AAGGCGGTTTACCGCATCCGCGACGACGTCGCGGTCGGTTACCCGGTCAATCTGGCGATGAAACAGACCAATCTCTTTCC
GAACATGGTCATCCAGATGACCGCCATCGGCGAGGAGGCCGGCGCGCTGGATACCATGCTGTTCAAGGTCGCCGAGTACT
ACGAGCAGGAAGTGAACAATGCGGTCGATGCGCTGGCCAGCCTGATCGAACCGCTGATCATGGTGGTGCTGGGCGTCCTC
GTCGGCGGCATGGTGGTCGGCATGTACCTGCCCATCTTCAAGCTGGCCGCGACAATCGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(85-208)

Type II secretion system (T2SS), protein F (T2SSF)

(289-411)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0E3UNW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

52.941

97.143

0.514
  pilC Acinetobacter baumannii D1279779

51.365

95.952

0.493
  pilC Pseudomonas stutzeri DSM 10701

51.768

94.286

0.488
  pilC Acinetobacter baylyi ADP1

50.124

95.952

0.481
  pilG Neisseria gonorrhoeae MS11

43.5

95.238

0.414
  pilG Neisseria meningitidis 44/76-A

43.25

95.238

0.412
  pilC Vibrio cholerae strain A1552

39.512

97.619

0.386
  pilC Vibrio campbellii strain DS40M4

38.903

95.476

0.371
  pilC Thermus thermophilus HB27

38.308

95.714

0.367

Multiple sequence alignment