Detailed information NTG0141359

Bioinformatically predicted

Overview

• Name: comFC
• Type: Machinery gene
• Locus tag: UP12_RS20320
• Genome accession: NZ_CP011007
• Coordinates: 3258786..3259472 (-)
• Length: 228 a.a.
• NCBI ID: WP_208856849.1
• Uniprot ID: -
• Organism: Bacillus pumilus strain SH-B9
• Function: ssDNA transport into the cell (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3253786..3264472

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
UP12_RS16530 (UP12_16545)	fliW	3253920..3254354 (-)	435	WP_058013563.1	flagellar assembly protein FliW	-
UP12_RS16535 (UP12_16550)	-	3254382..3254960 (-)	579	WP_012011425.1	DUF6470 family protein	-
UP12_RS16540 (UP12_16555)	flgL	3255009..3255920 (-)	912	WP_061409756.1	flagellar hook-associated protein FlgL	-
UP12_RS16545 (UP12_16560)	flgK	3255930..3257450 (-)	1521	WP_061409758.1	flagellar hook-associated protein FlgK	-
UP12_RS16550 (UP12_16565)	-	3257466..3257948 (-)	483	WP_034660146.1	flagellar protein FlgN	-
UP12_RS16555 (UP12_16570)	flgM	3257967..3258230 (-)	264	WP_003213252.1	flagellar biosynthesis anti-sigma factor FlgM	-
UP12_RS16560 (UP12_16575)	-	3258310..3258729 (-)	420	WP_034660147.1	TIGR03826 family flagellar region protein	-
UP12_RS20320 (UP12_16580)	comFC	3258786..3259472 (-)	687	WP_208856849.1	ComF family protein	Machinery gene
UP12_RS16570 (UP12_16585)	-	3259469..3259762 (-)	294	WP_061409760.1	competence protein ComFB	-
UP12_RS16575 (UP12_16590)	comFA	3259829..3261208 (-)	1380	WP_151282355.1	DEAD/DEAH box helicase	Machinery gene
UP12_RS16580 (UP12_16595)	-	3261328..3262170 (-)	843	WP_058013557.1	DegV family protein	-
UP12_RS16585 (UP12_16600)	degU	3262388..3263077 (-)	690	WP_008348273.1	two-component system response regulator DegU	Regulator
UP12_RS16590 (UP12_16605)	degS	3263142..3264317 (-)	1176	WP_024719243.1	sensor histidine kinase	Regulator

Sequence

Protein

• Length: 228 a.a.
• Molecular weight: 26047.40 Da
• Isoelectric Point: 9.9625

>NTDB_id=141359 UP12_RS20320 WP_208856849.1 3258786..3259472(-) (comFC) [Bacillus pumilus strain SH-B9]
MICLICEGHFVASFTWKSLLLLNDNRLCIACKHRLEKIQRPICPACGRAQSNDQLCQDCSRWKERLDSTTVLVKNRSVYA
YNDLMKDVLSRFKFRGDTALAELFKQDVQAIFKRSFSIKEPVLIPIPLSKERLNERGFNQSVILASLIGQPIQQPLVKIH
QSKQSKKKKNERLDQKGMFQINQTDVIVQRDVILIDDIYTTGATIYDAARILKEAGAKSVSSFTLIRS

Nucleotide

• Length: 687 bp

>NTDB_id=141359 UP12_RS20320 WP_208856849.1 3258786..3259472(-) (comFC) [Bacillus pumilus strain SH-B9]
TTGATCTGCCTAATTTGTGAGGGGCATTTTGTCGCTTCTTTTACATGGAAATCATTACTTCTATTAAATGATAATCGTCT
ATGTATAGCATGTAAGCATCGCCTAGAAAAAATTCAACGCCCGATTTGTCCAGCCTGTGGGAGAGCGCAGTCGAATGATC
AATTATGTCAAGACTGTTCCAGGTGGAAAGAACGCCTTGATTCTACTACAGTACTTGTGAAAAATAGGTCTGTCTATGCT
TACAACGATTTGATGAAAGATGTCCTTTCCCGCTTTAAATTTCGAGGTGATACAGCATTAGCTGAGCTTTTTAAACAAGA
TGTCCAAGCGATATTTAAGCGTTCCTTTTCAATTAAAGAACCTGTACTAATCCCGATTCCTTTAAGTAAAGAAAGACTAA
ATGAAAGAGGGTTTAATCAGTCCGTTATACTTGCTTCCTTGATTGGTCAGCCGATCCAGCAGCCTCTTGTGAAAATACAT
CAAAGCAAACAGTCCAAGAAAAAGAAAAATGAACGTTTAGATCAAAAAGGAATGTTTCAAATCAATCAGACAGATGTGAT
CGTTCAAAGGGATGTTATCTTAATTGACGATATTTATACAACAGGGGCCACCATTTATGATGCGGCGAGAATTTTAAAAG
AAGCAGGTGCCAAAAGTGTTTCCTCATTTACGTTGATCCGTAGTTAA

Domains

Predicted by InterproScan.

• Double zinc ribbon domain (DZR_2) (3-59)

• Phosphoribosyl transferase domain (Pribosyltran) (136-226)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comFC	Bacillus subtilis subsp. subtilis str. 168	49.565	100	0.5
comFC/cflB	Streptococcus mitis SK321	39.565	100	0.399
comFC/cflB	Streptococcus mitis NCTC 12261	38.696	100	0.39
comFC/cflB	Streptococcus pneumoniae TIGR4	38.261	100	0.386
comFC/cflB	Streptococcus pneumoniae Rx1	37.991	100	0.382
comFC/cflB	Streptococcus pneumoniae D39	37.991	100	0.382
comFC/cflB	Streptococcus pneumoniae R6	37.991	100	0.382