Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   UP12_RS16585 Genome accession   NZ_CP011007
Coordinates   3262388..3263077 (-) Length   229 a.a.
NCBI ID   WP_008348273.1    Uniprot ID   A0A5K1NCW2
Organism   Bacillus pumilus strain SH-B9     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3257388..3268077
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UP12_RS16550 (UP12_16565) - 3257466..3257948 (-) 483 WP_034660146.1 flagellar protein FlgN -
  UP12_RS16555 (UP12_16570) flgM 3257967..3258230 (-) 264 WP_003213252.1 flagellar biosynthesis anti-sigma factor FlgM -
  UP12_RS16560 (UP12_16575) - 3258310..3258729 (-) 420 WP_034660147.1 TIGR03826 family flagellar region protein -
  UP12_RS20320 (UP12_16580) comFC 3258786..3259472 (-) 687 WP_208856849.1 ComF family protein Machinery gene
  UP12_RS16570 (UP12_16585) - 3259469..3259762 (-) 294 WP_061409760.1 competence protein ComFB -
  UP12_RS16575 (UP12_16590) comFA 3259829..3261208 (-) 1380 WP_151282355.1 DEAD/DEAH box helicase Machinery gene
  UP12_RS16580 (UP12_16595) - 3261328..3262170 (-) 843 WP_058013557.1 DegV family protein -
  UP12_RS16585 (UP12_16600) degU 3262388..3263077 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  UP12_RS16590 (UP12_16605) degS 3263142..3264317 (-) 1176 WP_024719243.1 sensor histidine kinase Regulator
  UP12_RS16595 (UP12_16610) - 3264539..3265207 (+) 669 WP_058013556.1 YigZ family protein -
  UP12_RS16600 (UP12_16615) - 3265192..3266247 (+) 1056 WP_061409762.1 LCP family protein -
  UP12_RS16605 (UP12_16620) - 3266283..3267350 (-) 1068 WP_058013554.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25852.54 Da        Isoelectric Point: 5.9436

>NTDB_id=141352 UP12_RS16585 WP_008348273.1 3262388..3263077(-) (degU) [Bacillus pumilus strain SH-B9]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVADGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=141352 UP12_RS16585 WP_008348273.1 3262388..3263077(-) (degU) [Bacillus pumilus strain SH-B9]
GTGACTAAAGTAAATATTGTAATTATTGATGATCACCAATTATTCCGTGAAGGTGTCAAACGGATTTTAGATTTTGAACC
TACTTTTGAAGTAGTTGCAGAAGGAGACGACGGTGACGAAGCTGCACGTATTGTAGAACACTATCATCCGGATGTTGTCA
TTATGGACATTAATATGCCGAATGTAAATGGTGTAGAGGCTACAAAGCAGCTAGTTGAGCTTTATCCCGAATCAAAAGTC
ATTATTCTATCTATTCATGACGATGAAAACTATGTGACACATGCATTAAAAACAGGAGCAAGAGGTTACCTGTTAAAAGA
AATGGATGCAGACACGCTCATTGAAGCAGTGAAAGTCGTAGCTGACGGAGGATCTTATTTACATCCGAAAGTTACTCATA
ACTTAGTAAATGAATTCCGGCGCCTAGCGACTAGCGGCGTTTCAGCACATCCGCAGCATGAAGTATATCCTGAAATTCGG
AGACCACTTCATATCTTAACGAGACGTGAGTGCGAAGTACTTCAAATGTTAGCTGACGGAAAGAGCAATAGAGGAATTGG
TGAGTCGCTCTTTATTAGTGAGAAAACAGTCAAAAACCACGTGAGTAACATTTTACAAAAAATGAATGTAAACGACCGTA
CACAAGCTGTTGTTGTAGCAATTAAGAACGGCTGGGTAGAAATGAGATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1NCW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996

Multiple sequence alignment