Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   UP12_RS16575 Genome accession   NZ_CP011007
Coordinates   3259829..3261208 (-) Length   459 a.a.
NCBI ID   WP_151282355.1    Uniprot ID   -
Organism   Bacillus pumilus strain SH-B9     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3254829..3266208
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UP12_RS16540 (UP12_16555) flgL 3255009..3255920 (-) 912 WP_061409756.1 flagellar hook-associated protein FlgL -
  UP12_RS16545 (UP12_16560) flgK 3255930..3257450 (-) 1521 WP_061409758.1 flagellar hook-associated protein FlgK -
  UP12_RS16550 (UP12_16565) - 3257466..3257948 (-) 483 WP_034660146.1 flagellar protein FlgN -
  UP12_RS16555 (UP12_16570) flgM 3257967..3258230 (-) 264 WP_003213252.1 flagellar biosynthesis anti-sigma factor FlgM -
  UP12_RS16560 (UP12_16575) - 3258310..3258729 (-) 420 WP_034660147.1 TIGR03826 family flagellar region protein -
  UP12_RS20320 (UP12_16580) comFC 3258786..3259472 (-) 687 WP_208856849.1 ComF family protein Machinery gene
  UP12_RS16570 (UP12_16585) - 3259469..3259762 (-) 294 WP_061409760.1 competence protein ComFB -
  UP12_RS16575 (UP12_16590) comFA 3259829..3261208 (-) 1380 WP_151282355.1 DEAD/DEAH box helicase Machinery gene
  UP12_RS16580 (UP12_16595) - 3261328..3262170 (-) 843 WP_058013557.1 DegV family protein -
  UP12_RS16585 (UP12_16600) degU 3262388..3263077 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  UP12_RS16590 (UP12_16605) degS 3263142..3264317 (-) 1176 WP_024719243.1 sensor histidine kinase Regulator
  UP12_RS16595 (UP12_16610) - 3264539..3265207 (+) 669 WP_058013556.1 YigZ family protein -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 52507.38 Da        Isoelectric Point: 10.1418

>NTDB_id=141351 UP12_RS16575 WP_151282355.1 3259829..3261208(-) (comFA) [Bacillus pumilus strain SH-B9]
MNMDKAMELGQHLQSRHLLTAETRCSQSDLDWLEEKGLVMRTPAIERKANGLICCRCGVSKNRYFAHSPCDKCQKDCVYC
RSCIMMGKTKECGFLYEWTGPQMEETCHTELTWQGNLSKGQKRASEKLIKAIKSKSDLLIWAVCGAGKTEVLFHGIEYAL
HQGMSVCIATPRTDVVLELEPRLKKAFQGLNIAVLYGGSPQRFQIAPLVIATTHQLMRYKHAFDVLIIDEVDAFPYSIDE
RLQFAVLKAMRKKGVRVYLSATPSKKMIKDVFRGQLEAIKIPLRFHQQPLPVPSFHWVGNWKKKLKKNQLPSKVMNWMQN
HITKKRRTLFFVTSISTMKKVTKVLRKHHLNVEGVSAEDPDRKQKVQQFRDDKYDVLVTTTILERGVTIPNVQVGVLGAE
STIFTESALVQISGRAGRHPDFFKGDVFFFHFGLTRNMKQAKKHIVKMNDTAEKEFSEK

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=141351 UP12_RS16575 WP_151282355.1 3259829..3261208(-) (comFA) [Bacillus pumilus strain SH-B9]
TTGAACATGGACAAAGCAATGGAACTAGGGCAGCACTTGCAGTCACGCCACCTGCTTACTGCTGAAACAAGATGCTCACA
GTCTGATTTGGATTGGTTGGAGGAGAAAGGGTTAGTTATGCGAACACCTGCTATTGAGAGGAAAGCAAATGGTCTAATTT
GCTGCAGATGTGGTGTATCAAAAAATCGGTACTTTGCCCACTCTCCGTGTGACAAGTGTCAAAAAGATTGTGTGTATTGT
AGATCATGCATCATGATGGGGAAAACAAAGGAATGTGGCTTTCTTTATGAATGGACGGGTCCGCAAATGGAAGAAACATG
TCACACGGAATTAACATGGCAGGGAAACCTGTCTAAAGGACAAAAAAGAGCATCAGAAAAATTGATCAAAGCGATAAAAA
GCAAATCTGATTTACTCATCTGGGCAGTTTGCGGGGCAGGGAAAACAGAGGTGCTTTTTCACGGAATAGAATATGCCTTA
CATCAAGGAATGAGTGTCTGCATTGCGACACCTAGAACTGATGTTGTCCTTGAACTAGAGCCGCGGCTTAAGAAAGCATT
TCAAGGACTGAACATAGCTGTTCTTTATGGAGGAAGTCCTCAAAGGTTCCAAATAGCACCGCTAGTCATCGCTACAACTC
ACCAGTTGATGAGATATAAACATGCATTTGATGTGCTCATTATTGATGAAGTGGACGCCTTTCCTTATTCAATCGATGAA
CGTCTCCAATTTGCTGTTTTAAAGGCAATGAGAAAGAAAGGGGTTAGGGTTTATTTAAGTGCGACGCCGTCTAAGAAAAT
GATAAAAGATGTATTTCGTGGACAACTAGAAGCCATTAAAATTCCTCTGCGCTTTCACCAACAACCTTTACCCGTCCCAT
CCTTTCATTGGGTTGGAAATTGGAAGAAGAAATTAAAGAAGAATCAGCTCCCATCTAAAGTAATGAATTGGATGCAGAAT
CATATTACAAAAAAGAGAAGGACTTTATTTTTTGTTACTTCTATTTCTACTATGAAGAAGGTAACGAAGGTTCTTAGAAA
GCACCACTTAAATGTAGAAGGGGTGTCTGCTGAAGATCCAGACAGGAAACAAAAGGTCCAGCAATTCAGAGATGATAAAT
ACGATGTACTAGTTACAACCACAATTCTAGAAAGAGGCGTAACGATTCCAAATGTACAAGTGGGGGTACTAGGTGCAGAA
TCTACTATCTTTACAGAAAGTGCACTTGTTCAGATTTCTGGTAGAGCAGGTAGACATCCTGATTTTTTTAAAGGAGATGT
TTTCTTTTTTCATTTTGGTTTAACGAGAAATATGAAACAAGCAAAAAAGCATATTGTAAAAATGAATGATACAGCTGAAA
AAGAGTTCTCTGAAAAATAA

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(322-419)

Type III restriction enzyme, res subunit (ResIII)

(116-264)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

53.187

99.129

0.527

Multiple sequence alignment