Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   UP12_RS08285 Genome accession   NZ_CP011007
Coordinates   1690457..1691707 (+) Length   416 a.a.
NCBI ID   WP_061407840.1    Uniprot ID   -
Organism   Bacillus pumilus strain SH-B9     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1685457..1696707
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UP12_RS08260 (UP12_08265) - 1686866..1687594 (+) 729 WP_061407835.1 SDR family oxidoreductase -
  UP12_RS08265 (UP12_08270) - 1687668..1687925 (+) 258 WP_003211590.1 DUF3243 domain-containing protein -
  UP12_RS08270 (UP12_08275) - 1688057..1688848 (+) 792 WP_003211480.1 DUF3388 domain-containing protein -
  UP12_RS08275 (UP12_08280) - 1688872..1689783 (+) 912 WP_061407837.1 helix-turn-helix domain-containing protein -
  UP12_RS08280 (UP12_08285) pgsA 1689859..1690440 (+) 582 WP_058013946.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  UP12_RS08285 (UP12_08290) cinA 1690457..1691707 (+) 1251 WP_061407840.1 competence/damage-inducible protein A Machinery gene
  UP12_RS08290 (UP12_08295) recA 1691884..1692924 (+) 1041 WP_058013944.1 recombinase RecA Machinery gene
  UP12_RS08295 (UP12_08300) rny 1693425..1694987 (+) 1563 WP_003211958.1 ribonuclease Y -
  UP12_RS08300 (UP12_08305) - 1695076..1695870 (+) 795 WP_058013943.1 TIGR00282 family metallophosphoesterase -
  UP12_RS08310 (UP12_08315) spoVS 1696072..1696332 (+) 261 WP_003211281.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45525.65 Da        Isoelectric Point: 5.0622

>NTDB_id=141327 UP12_RS08285 WP_061407840.1 1690457..1691707(+) (cinA) [Bacillus pumilus strain SH-B9]
MKSERKAEIIAVGSELLLGQITNTNAQFISKQLAEIGVNVYYHTAVGDNPERLKSAIQVAQERSNFIIFSGGLGPTKDDL
TKETIASTLGKELVLNEEAFESIQEYFRKTGRDMSPNNRKQALVLEGSDVLVNRFGMAPGMFIQENDTFYMLLPGPPSEL
HPMFENEAKPLISEKLGLKEKIVSVVLRFFGIGESQLETDLEDLIDAQTNPTIAPLASDGEVTLRLTAKHEDEKETERLL
KETEAKILARVGEYFYGYGDTSLVREASKALHEHGKTVAAAESLTGGMFSEWLTDLEGASSILSGSIVCYTNKVKQQVLG
CREETLSSHGAVSKECALELAEGARKLTGSDIGISFTGVAGPDTHEGQPVGKVFIGLSTKDHTDVVEWMFTGSRSGIRKR
AVKYGLHHLLNLLKES

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=141327 UP12_RS08285 WP_061407840.1 1690457..1691707(+) (cinA) [Bacillus pumilus strain SH-B9]
TTGAAGTCAGAGAGAAAAGCAGAAATTATTGCAGTCGGTTCCGAACTTTTGCTAGGGCAAATTACGAATACGAATGCACA
ATTCATCAGCAAACAGCTAGCTGAAATTGGTGTGAATGTTTATTACCATACAGCAGTTGGTGACAATCCAGAGCGTTTAA
AAAGCGCCATTCAAGTGGCGCAGGAAAGATCGAATTTTATTATCTTCTCAGGTGGTCTTGGACCAACGAAAGATGATTTA
ACAAAAGAAACCATTGCCAGTACGCTCGGAAAAGAGCTCGTGCTAAATGAAGAAGCGTTTGAATCCATTCAAGAATACTT
TCGAAAGACTGGACGAGACATGTCACCGAATAACCGGAAGCAGGCGCTCGTTCTAGAAGGTTCTGATGTGCTTGTGAACC
GGTTTGGGATGGCCCCAGGTATGTTTATTCAAGAAAACGATACGTTTTATATGCTGCTTCCTGGCCCGCCAAGTGAACTG
CATCCGATGTTTGAGAACGAGGCGAAACCGCTGATATCTGAGAAACTGGGTTTAAAGGAAAAAATCGTGTCTGTTGTTCT
TCGCTTCTTCGGAATCGGTGAATCACAGCTTGAAACAGACCTAGAAGATTTAATTGATGCTCAAACAAACCCAACGATTG
CACCTCTTGCATCTGACGGTGAAGTAACACTTAGGCTCACGGCCAAGCATGAGGATGAAAAAGAAACGGAGCGTCTGTTA
AAAGAAACAGAAGCGAAAATTTTAGCACGGGTAGGAGAGTACTTCTACGGTTATGGTGATACCTCACTTGTCCGTGAAGC
TTCAAAGGCCTTGCACGAACACGGGAAAACAGTGGCAGCGGCTGAGAGCCTGACAGGCGGAATGTTTTCTGAATGGCTGA
CAGATCTTGAAGGTGCATCGTCGATTTTAAGCGGCAGTATCGTTTGTTATACAAACAAAGTCAAACAGCAGGTGCTTGGC
TGCCGGGAAGAAACATTGTCTTCTCATGGTGCTGTCAGCAAAGAGTGTGCTTTAGAGCTTGCTGAAGGTGCTAGAAAGCT
TACGGGAAGTGATATTGGCATTAGCTTTACGGGTGTAGCAGGCCCTGATACCCACGAGGGACAGCCTGTCGGGAAAGTGT
TCATCGGGCTATCTACGAAAGACCATACTGACGTGGTTGAATGGATGTTTACAGGAAGCCGGTCGGGCATTCGCAAGCGC
GCTGTGAAATACGGTCTGCATCACTTGCTCAATTTATTAAAAGAAAGTTAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(262-412)

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)

Damage-inducible protein CinA KH domain (CinA_KH)

(186-257)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

74.217

99.76

0.74
  cinA Streptococcus mutans UA159

48.558

100

0.486
  cinA Streptococcus mitis SK321

47.981

100

0.486
  cinA Streptococcus mitis NCTC 12261

47.743

100

0.483
  cinA Streptococcus pneumoniae TIGR4

47.743

100

0.483
  cinA Streptococcus pneumoniae Rx1

47.506

100

0.481
  cinA Streptococcus pneumoniae R6

47.506

100

0.481
  cinA Streptococcus pneumoniae D39

47.268

100

0.478
  cinA Streptococcus suis isolate S10

43.651

90.865

0.397

Multiple sequence alignment