Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   vpachn25_RS15560 Genome accession   NZ_CP010883
Coordinates   3366775..3367887 (-) Length   370 a.a.
NCBI ID   WP_065871008.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain CHN25     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3361775..3372887
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  vpachn25_RS15530 (VpaChn25_2933) hemF 3362236..3363153 (-) 918 WP_045587076.1 oxygen-dependent coproporphyrinogen oxidase -
  vpachn25_RS15535 (VpaChn25_2934) - 3363201..3363758 (-) 558 WP_015297509.1 L-threonylcarbamoyladenylate synthase -
  vpachn25_RS15540 (VpaChn25_2935) purE 3363958..3364443 (+) 486 WP_005394016.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  vpachn25_RS15545 (VpaChn25_2936) - 3364448..3365575 (+) 1128 WP_065871006.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  vpachn25_RS15550 (VpaChn25_2937) - 3365645..3366214 (-) 570 WP_065871007.1 type I DNA topoisomerase -
  vpachn25_RS15555 (VpaChn25_2938) - 3366293..3366772 (-) 480 WP_005461440.1 DUF494 family protein -
  vpachn25_RS15560 (VpaChn25_2939) dprA 3366775..3367887 (-) 1113 WP_065871008.1 DNA-processing protein DprA Machinery gene
  vpachn25_RS15565 (VpaChn25_2940) - 3367871..3368965 (-) 1095 WP_065871009.1 LysM peptidoglycan-binding domain-containing protein -
  vpachn25_RS15570 (VpaChn25_2941) def 3369104..3369622 (+) 519 WP_005461416.1 peptide deformylase -
  vpachn25_RS15575 (VpaChn25_2942) fmt 3369656..3370603 (+) 948 WP_065871010.1 methionyl-tRNA formyltransferase -
  vpachn25_RS15580 (VpaChn25_2943) rsmB 3370684..3371967 (+) 1284 WP_005394040.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 39844.56 Da        Isoelectric Point: 6.5852

>NTDB_id=140588 vpachn25_RS15560 WP_065871008.1 3366775..3367887(-) (dprA) [Vibrio parahaemolyticus strain CHN25]
MKPRNNDSDLAAWLKLSCLPGIGGVKMNKLLAKDTPCNIISSSSDQLYQLGLTNKQLQAWASVDKEVDACLTWLATSTNH
HILTLADPLYPPLLKQVVAPPPLLFVEGNPTFLSQPQIAMVGSRNASFDGLHHARQFAVELAQQELIVTSGLALGIDGHA
HDGALQAGGKTIAVLGSGLEHVYPARHRGLAQRVTKNGALVSEFRPNAKPRAENFPRRNRIISGLSLGVLVVEAAEKSGS
LITARYALEQGREVFALPASINARNASGGNQLIRNGACLVEKTQDILDEIQSLLDWSVNQSIDLFSTLNDEEELPFPQLL
ANVGSEATPVDILANRTNIPVQEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=140588 vpachn25_RS15560 WP_065871008.1 3366775..3367887(-) (dprA) [Vibrio parahaemolyticus strain CHN25]
ATGAAACCACGCAATAACGACAGTGACCTTGCTGCCTGGCTCAAGCTGAGTTGCTTGCCAGGCATCGGTGGGGTCAAAAT
GAATAAGCTGCTCGCCAAAGATACGCCTTGCAATATCATCAGTTCCTCTTCTGATCAGCTCTATCAATTGGGTTTGACGA
ACAAACAGTTGCAAGCTTGGGCTTCGGTCGATAAAGAGGTCGATGCTTGTTTAACGTGGCTAGCCACTTCTACAAATCAT
CACATTCTGACGCTGGCCGATCCTTTATATCCCCCTTTACTCAAGCAAGTTGTCGCTCCGCCTCCGTTGTTATTTGTCGA
GGGGAATCCTACCTTTTTATCGCAACCACAAATTGCCATGGTGGGCAGCCGTAACGCTAGTTTTGATGGTTTACACCATG
CACGTCAATTTGCGGTAGAGTTGGCTCAGCAAGAATTGATTGTCACTAGCGGCTTAGCGCTTGGGATTGATGGCCATGCT
CATGATGGTGCGCTACAAGCGGGTGGTAAGACGATAGCTGTGCTCGGGTCTGGTTTAGAACATGTTTATCCTGCTCGTCA
TCGTGGTTTAGCGCAGCGAGTAACAAAAAATGGCGCACTGGTTTCTGAGTTTCGCCCCAATGCCAAGCCTCGCGCAGAAA
ACTTTCCGCGTCGAAACCGTATCATTAGCGGCTTATCGTTAGGTGTGTTAGTGGTGGAAGCGGCCGAGAAAAGTGGCTCG
CTTATTACCGCGCGTTATGCCCTTGAGCAAGGGCGAGAAGTGTTTGCGCTGCCGGCCTCAATTAATGCTCGCAATGCTAG
TGGTGGTAACCAATTGATTCGCAACGGTGCCTGCCTCGTAGAGAAAACCCAAGATATCCTCGATGAAATACAGTCTTTAC
TCGATTGGTCTGTTAATCAAAGTATCGATTTATTTTCTACGCTAAATGATGAAGAAGAATTGCCATTTCCTCAGCTGTTA
GCTAACGTAGGAAGTGAAGCTACACCGGTTGATATTCTTGCAAACAGGACCAATATACCTGTCCAAGAAGTCATGATGCA
GCTCTTAGAGCTTGAGCTCTCTGGGCATGTTGTTGCGGTTTCAGGTGGCTATATTCGAAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(318-363)

DNA recombination-mediator protein A (DNA_processg_A)

(77-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

84.865

100

0.849
  dprA Vibrio cholerae strain A1552

59.189

100

0.592
  dprA Glaesserella parasuis strain SC1401

46.649

100

0.47
  dprA Haemophilus influenzae Rd KW20

45.994

91.081

0.419
  dprA Legionella pneumophila strain ERS1305867

47.239

88.108

0.416
  dprA Neisseria meningitidis strain C311

37.436

100

0.395
  dprA Neisseria meningitidis MC58

37.436

100

0.395
  dprA Neisseria gonorrhoeae MS11

35.567

100

0.373
  dprA Neisseria gonorrhoeae strain FA1090

35.309

100

0.37

Multiple sequence alignment