Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   SI82_RS00925 Genome accession   NZ_CP010783
Coordinates   148008..148403 (+) Length   131 a.a.
NCBI ID   WP_003098836.1    Uniprot ID   A0A3L8GMQ5
Organism   Streptococcus iniae strain YSFST01-82     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 143008..153403
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SI82_RS00885 (SI82_00885) - 143093..143545 (+) 453 WP_003098820.1 hypothetical protein -
  SI82_RS00890 (SI82_00890) - 143555..144211 (+) 657 WP_003098822.1 CPBP family intramembrane glutamic endopeptidase -
  SI82_RS00895 (SI82_00895) proC 144245..145015 (-) 771 WP_003098824.1 pyrroline-5-carboxylate reductase -
  SI82_RS00900 (SI82_00900) pepA 145039..146106 (-) 1068 WP_003098826.1 glutamyl aminopeptidase -
  SI82_RS00905 (SI82_00905) - 146247..146531 (+) 285 WP_003098828.1 DUF4651 domain-containing protein -
  SI82_RS00910 (SI82_00910) - 146528..146845 (+) 318 WP_003098830.1 thioredoxin family protein -
  SI82_RS00915 (SI82_00915) ytpR 146862..147488 (+) 627 WP_003098832.1 YtpR family tRNA-binding protein -
  SI82_RS00920 (SI82_00920) - 147526..147936 (-) 411 WP_003098834.1 GNAT family N-acetyltransferase -
  SI82_RS00925 (SI82_00925) ssbA 148008..148403 (+) 396 WP_003098836.1 single-stranded DNA-binding protein Machinery gene
  SI82_RS00930 (SI82_00930) - 148877..149839 (+) 963 WP_003098839.1 ABC transporter substrate-binding protein -
  SI82_RS00935 (SI82_00935) - 149853..150815 (+) 963 WP_003098841.1 ABC transporter substrate-binding protein -
  SI82_RS00940 (SI82_00940) - 150825..151709 (+) 885 WP_003098842.1 ABC transporter permease -
  SI82_RS00945 (SI82_00945) - 151718..152521 (+) 804 WP_003098843.1 ABC transporter ATP-binding protein -
  SI82_RS00950 (SI82_00950) - 152582..153226 (-) 645 WP_003098844.1 deoxynucleoside kinase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15061.41 Da        Isoelectric Point: 5.9574

>NTDB_id=139766 SI82_RS00925 WP_003098836.1 148008..148403(+) (ssbA) [Streptococcus iniae strain YSFST01-82]
MYNKVVMIGRLVAEPELIKTAKDKSICRVSLAVNRRYKNADGEKQVDFVPMILWGKLAETLVSYGSKGSLMSIDGELRTR
RYEKEGKSHFMMEILCQSFQLLESRAQRAMRENNADNELADLILDEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=139766 SI82_RS00925 WP_003098836.1 148008..148403(+) (ssbA) [Streptococcus iniae strain YSFST01-82]
ATGTATAATAAAGTCGTAATGATTGGCCGCTTGGTTGCAGAACCAGAATTAATAAAAACAGCAAAGGATAAGTCTATTTG
TCGTGTTTCACTAGCAGTCAATAGGCGTTACAAAAATGCTGATGGTGAAAAACAGGTGGATTTTGTCCCAATGATACTTT
GGGGGAAATTAGCTGAGACACTCGTTTCTTATGGCAGCAAGGGAAGTTTGATGTCGATTGATGGTGAATTGCGTACAAGA
CGCTATGAAAAAGAGGGCAAATCTCATTTTATGATGGAGATTTTGTGTCAATCTTTTCAGTTATTAGAAAGTCGGGCACA
AAGAGCCATGCGGGAAAACAATGCTGACAATGAGTTAGCAGACCTCATTTTAGATGAGGAAGAATTACCTTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3L8GMQ5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Streptococcus mutans UA159

73.282

100

0.733
  ssbB/cilA Streptococcus pneumoniae Rx1

67.176

100

0.672
  ssbB/cilA Streptococcus pneumoniae D39

67.176

100

0.672
  ssbB/cilA Streptococcus pneumoniae R6

67.176

100

0.672
  ssbB/cilA Streptococcus mitis NCTC 12261

67.176

100

0.672
  ssbB/cilA Streptococcus pneumoniae TIGR4

66.412

100

0.664
  ssbB/cilA Streptococcus mitis SK321

66.412

100

0.664
  ssbB Streptococcus sobrinus strain NIDR 6715-7

65.649

100

0.656
  ssbB Lactococcus lactis subsp. cremoris KW2

57.143

85.496

0.489

Multiple sequence alignment