Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   SB48_RS10510 Genome accession   NZ_CP010525
Coordinates   2130357..2131589 (-) Length   410 a.a.
NCBI ID   WP_035185112.1    Uniprot ID   -
Organism   Heyndrickxia coagulans strain HM-08     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 2125357..2136589
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SB48_RS10485 (SB48_HM08orf03930) spoVS 2125455..2125715 (-) 261 WP_014098499.1 stage V sporulation protein SpoVS -
  SB48_RS10490 (SB48_HM08orf03934) - 2126090..2126890 (-) 801 WP_014098500.1 TIGR00282 family metallophosphoesterase -
  SB48_RS10495 (SB48_HM08orf03935) rny 2126977..2128539 (-) 1563 WP_014098501.1 ribonuclease Y -
  SB48_RS10500 (SB48_HM08orf03938) recA 2129022..2130089 (-) 1068 WP_014098502.1 recombinase RecA Machinery gene
  SB48_RS10510 (SB48_HM08orf03940) cinA 2130357..2131589 (-) 1233 WP_035185112.1 competence/damage-inducible protein A Machinery gene
  SB48_RS10515 (SB48_HM08orf03941) pgsA 2131753..2132331 (-) 579 WP_035185105.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  SB48_RS10520 (SB48_HM08orf03942) - 2132388..2133293 (-) 906 WP_035185115.1 RodZ family helix-turn-helix domain-containing protein -
  SB48_RS10525 (SB48_HM08orf03943) - 2133310..2134101 (-) 792 WP_014098506.1 DUF3388 domain-containing protein -
  SB48_RS10530 (SB48_HM08orf03945) - 2134299..2134559 (-) 261 WP_013859159.1 DUF3243 domain-containing protein -
  SB48_RS10535 (SB48_HM08orf03948) - 2134743..2135465 (-) 723 WP_017551554.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 44955.68 Da        Isoelectric Point: 5.6864

>NTDB_id=139032 SB48_RS10510 WP_035185112.1 2130357..2131589(-) (cinA) [Heyndrickxia coagulans strain HM-08]
MNAEIIAVGSELLLGQITNTNATFIAAQLAEIGVDVYYQTVVGDNAERLEAAIRTAEGRADLLIFTGGLGPTKDDLTKET
IASHIEKKLVTNEDAMRSIEQFFIRTKRKMTENNKKQALVIEGSKVFPNDHGMAPGMLAKSGNHYYMLLPGPPHELEPMF
IHYASPAIQEELETIEKIESRVLRFFGIGESQLETEIRHILDSQTNPTVAPLAKEGEVTLRITAKHQSAETANEMIDQVE
KEIMQIAGSYFYGYNDMTLMEALLEKLSKKQLTLACAESLTAGKFAAEMASIQGVSTMLKGGVVVYSNEAKMKLAKVKKE
TLDKYGAVSSQCAKELAENIRSIMDADIGISFTGVAGPDSLEGHPPGTVWIGIAIKGKETATYLLELPGSRNNVRTRSVK
YGCWHLLKLL

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=139032 SB48_RS10510 WP_035185112.1 2130357..2131589(-) (cinA) [Heyndrickxia coagulans strain HM-08]
GTGAATGCCGAAATTATTGCAGTCGGTTCGGAACTTTTGCTTGGCCAGATCACCAATACAAATGCCACATTTATTGCCGC
ACAATTGGCGGAGATCGGCGTGGATGTGTACTACCAGACCGTTGTCGGCGATAACGCAGAGCGGCTCGAAGCGGCAATCC
GGACAGCGGAGGGCCGCGCCGATCTATTGATTTTTACTGGTGGGCTCGGTCCGACAAAGGATGATTTAACAAAAGAAACG
ATTGCATCGCACATCGAAAAAAAACTGGTGACAAACGAAGATGCCATGCGCTCCATCGAACAGTTTTTTATCCGTACAAA
ACGAAAAATGACGGAAAACAACAAAAAGCAGGCACTGGTCATCGAAGGTTCAAAAGTGTTTCCGAATGACCACGGTATGG
CGCCGGGCATGCTGGCCAAAAGCGGAAACCATTATTATATGCTGCTGCCCGGCCCGCCGCATGAACTGGAACCGATGTTT
ATCCATTACGCCAGCCCCGCAATCCAGGAAGAACTGGAAACGATCGAAAAAATCGAATCGCGCGTTCTCCGCTTCTTCGG
GATCGGCGAATCCCAGCTGGAAACAGAAATCCGCCATATATTGGATAGCCAAACCAATCCGACTGTCGCTCCGCTTGCGA
AAGAAGGGGAAGTGACACTTAGGATTACGGCGAAACACCAGTCGGCGGAAACGGCGAACGAAATGATCGATCAAGTGGAA
AAAGAGATTATGCAAATTGCCGGATCGTATTTTTACGGTTATAATGATATGACATTAATGGAGGCCCTGCTCGAAAAGCT
TTCGAAAAAACAGCTGACGCTTGCCTGCGCGGAAAGCCTGACTGCCGGCAAATTTGCAGCGGAAATGGCGTCCATCCAGG
GTGTCAGCACAATGTTGAAAGGCGGCGTTGTCGTCTATTCAAACGAAGCGAAGATGAAGCTCGCCAAAGTGAAAAAAGAA
ACGCTTGACAAGTACGGCGCCGTCAGCAGCCAGTGTGCAAAAGAACTGGCGGAAAATATCCGTAGCATTATGGATGCCGA
CATTGGCATCAGTTTTACAGGCGTGGCTGGCCCGGACTCCCTTGAAGGCCATCCGCCGGGAACCGTGTGGATCGGCATTG
CGATAAAAGGGAAAGAAACTGCCACTTATCTGTTGGAACTTCCCGGATCCCGCAACAACGTCCGCACGCGATCGGTGAAA
TACGGCTGCTGGCATTTGCTGAAACTGCTTTAG

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(258-408)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

56.373

99.512

0.561
  cinA Streptococcus pneumoniae TIGR4

46.172

100

0.471
  cinA Streptococcus mitis SK321

45.952

100

0.471
  cinA Streptococcus pneumoniae Rx1

45.694

100

0.466
  cinA Streptococcus pneumoniae R6

45.694

100

0.466
  cinA Streptococcus mitis NCTC 12261

45.476

100

0.466
  cinA Streptococcus pneumoniae D39

45.455

100

0.463
  cinA Streptococcus mutans UA159

44.665

98.293

0.439
  cinA Streptococcus suis isolate S10

39.418

92.195

0.363

Multiple sequence alignment