Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   NF53_RS19170 Genome accession   NZ_CP010106
Coordinates   3797716..3798954 (-) Length   412 a.a.
NCBI ID   WP_000990696.1    Uniprot ID   -
Organism   Bacillus thuringiensis serovar indiana strain HD521     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 3792716..3803954
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NF53_RS19145 (NF53_3716) spoVS 3792802..3793062 (-) 261 WP_000404341.1 stage V sporulation protein SpoVS -
  NF53_RS19150 (NF53_3717) - 3793212..3794006 (-) 795 WP_001221095.1 TIGR00282 family metallophosphoesterase -
  NF53_RS19155 (NF53_3718) rny 3794169..3795734 (-) 1566 WP_000099770.1 ribonuclease Y -
  NF53_RS19160 (NF53_3719) - 3796215..3796637 (-) 423 Protein_3751 DNA recombination/repair protein RecA -
  NF53_RS19165 (NF53_3720) recA 3796964..3797572 (-) 609 Protein_3752 recombinase RecA -
  NF53_RS19170 (NF53_3721) cinA 3797716..3798954 (-) 1239 WP_000990696.1 competence/damage-inducible protein CinA Machinery gene
  NF53_RS19175 (NF53_3722) pgsA 3798975..3799553 (-) 579 WP_001052967.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  NF53_RS19180 (NF53_3723) - 3799618..3800544 (-) 927 WP_000137459.1 helix-turn-helix domain-containing protein -
  NF53_RS19185 (NF53_3724) - 3800566..3801351 (-) 786 WP_000574107.1 DUF3388 domain-containing protein -
  NF53_RS19190 (NF53_3725) - 3801490..3801738 (-) 249 WP_000114450.1 DUF3243 domain-containing protein -
  NF53_RS19195 (NF53_3726) - 3801814..3802527 (-) 714 WP_000761056.1 SDR family oxidoreductase -
  NF53_RS19200 (NF53_3727) - 3802628..3803914 (-) 1287 WP_000411984.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 45576.96 Da        Isoelectric Point: 5.5065

>NTDB_id=134232 NF53_RS19170 WP_000990696.1 3797716..3798954(-) (cinA) [Bacillus thuringiensis serovar indiana strain HD521]
MNAEIIAVGTELLLGQIANTNAQFLSEKLASIGINVYYHTVVGDNNKRLQKAIEAAEERADILIFTGGLGPTKDDLTKET
IAASLDEELVYDEKALVLISNYFKRTGREFTENNKKQALVLNGATVFANDHGMAPGMGVNKNGKVYILLPGPPKEMKPMY
VSYVEPFLRNFTTGENIYSRVLRFFGIGESQLEVKVQDLIDGQTNPTIAPLANDGEVTLRLTAKHQNVREAEKLIQHVED
LILERVGEFFYGYDQEFLHYKAIELLKRKGLTLACAESLTGGLFGNQVTENAGVSSVFKGGVICYHNDVKQHVLRVPEEV
LHTDGAVSKECARYLAENVKDVLKADIGISFTGVAGPDASEQKEPGTVFVGLSIKDEPTVVFPLNLSGSRQQIRERTAKY
GFYHLYKKLEEI

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=134232 NF53_RS19170 WP_000990696.1 3797716..3798954(-) (cinA) [Bacillus thuringiensis serovar indiana strain HD521]
ATGAATGCTGAGATTATTGCGGTTGGAACTGAATTATTACTTGGACAAATTGCAAATACAAACGCCCAGTTTTTATCTGA
AAAGTTAGCTTCAATCGGAATTAACGTGTACTATCATACTGTTGTTGGTGATAATAATAAGCGACTGCAAAAGGCGATTG
AAGCTGCGGAAGAACGTGCTGATATACTTATTTTTACAGGTGGATTAGGACCGACAAAAGATGATTTAACGAAAGAAACG
ATAGCTGCTAGTTTAGATGAAGAGCTTGTGTATGATGAAAAGGCATTAGTCTTAATAAGTAATTACTTTAAGCGTACAGG
CCGTGAATTTACGGAGAATAATAAAAAGCAAGCGCTCGTTTTAAATGGAGCAACAGTATTTGCAAATGACCACGGTATGG
CGCCAGGTATGGGGGTAAATAAGAACGGAAAAGTTTATATTTTATTACCAGGGCCGCCAAAAGAAATGAAACCAATGTAT
GTAAGTTACGTAGAGCCTTTTTTACGTAATTTTACAACAGGAGAAAACATTTATTCTCGTGTGCTTCGTTTCTTTGGTAT
TGGGGAGTCCCAATTAGAGGTGAAAGTGCAAGATTTAATTGATGGACAAACAAACCCAACAATTGCCCCTTTAGCAAATG
ATGGAGAAGTGACATTACGTTTAACCGCTAAGCATCAAAATGTTAGGGAAGCGGAGAAACTAATTCAACATGTGGAAGAT
TTGATTTTAGAAAGAGTAGGAGAATTTTTCTACGGATATGACCAAGAATTTTTGCATTATAAGGCAATCGAGTTATTGAA
GAGAAAAGGGTTAACTTTAGCGTGTGCAGAAAGTTTAACAGGTGGTCTTTTTGGAAATCAAGTAACTGAAAACGCTGGTG
TTTCTTCTGTATTTAAAGGCGGTGTCATTTGTTATCATAATGATGTGAAGCAACATGTTTTACGTGTGCCTGAAGAAGTG
TTGCATACTGATGGTGCAGTTAGTAAAGAATGTGCTCGTTATCTTGCTGAAAATGTTAAGGATGTATTAAAAGCGGATAT
CGGAATTAGTTTCACTGGGGTAGCAGGGCCAGATGCTTCAGAACAGAAAGAACCAGGAACAGTATTTGTTGGGCTTTCGA
TTAAGGATGAGCCAACTGTAGTCTTTCCTCTTAATTTAAGCGGAAGTCGTCAACAAATTAGAGAACGAACAGCAAAATAT
GGTTTTTATCATTTATATAAAAAGCTAGAAGAGATATAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(258-408)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Damage-inducible protein CinA KH domain (CinA_KH)

(179-252)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

58.252

100

0.583
  cinA Streptococcus pneumoniae TIGR4

46.778

100

0.476
  cinA Streptococcus mitis SK321

46.539

100

0.473
  cinA Streptococcus pneumoniae Rx1

46.301

100

0.471
  cinA Streptococcus pneumoniae R6

46.301

100

0.471
  cinA Streptococcus pneumoniae D39

46.062

100

0.468
  cinA Streptococcus mitis NCTC 12261

46.062

100

0.468
  cinA Streptococcus mutans UA159

45.98

96.602

0.444
  cinA Streptococcus suis isolate S10

40.053

91.505

0.367

Multiple sequence alignment