Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   PN96_RS13735 Genome accession   NZ_CP009977
Coordinates   2960795..2961904 (+) Length   369 a.a.
NCBI ID   WP_020333544.1    Uniprot ID   A0AAN1CXN6
Organism   Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 strain ATCC 14048     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2955795..2966904
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PN96_RS13715 (PN96_13535) rsmB 2956712..2957995 (-) 1284 WP_020333547.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  PN96_RS13720 (PN96_13540) fmt 2958078..2959025 (-) 948 WP_020333546.1 methionyl-tRNA formyltransferase -
  PN96_RS13725 (PN96_13545) def 2959060..2959578 (-) 519 WP_014233386.1 peptide deformylase -
  PN96_RS13730 (PN96_13550) - 2959717..2960811 (+) 1095 WP_020333545.1 LysM peptidoglycan-binding domain-containing protein -
  PN96_RS13735 (PN96_13555) dprA 2960795..2961904 (+) 1110 WP_020333544.1 DNA-processing protein DprA Machinery gene
  PN96_RS13740 (PN96_13560) - 2961907..2962386 (+) 480 WP_031779194.1 DUF494 family protein -
  PN96_RS13745 (PN96_13565) - 2962469..2963038 (+) 570 WP_020333542.1 topoisomerase DNA-binding C4 zinc finger domain-containing protein -
  PN96_RS13750 (PN96_13570) - 2963099..2964232 (-) 1134 WP_020333541.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  PN96_RS13755 (PN96_13575) purE 2964237..2964722 (-) 486 WP_005394016.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  PN96_RS13760 (PN96_13580) - 2964928..2965485 (+) 558 WP_014233380.1 L-threonylcarbamoyladenylate synthase -
  PN96_RS13765 (PN96_13585) hemF 2965534..2966451 (+) 918 WP_020333539.1 oxygen-dependent coproporphyrinogen oxidase -

Sequence

Protein


Download         Length: 369 a.a.        Molecular weight: 39925.74 Da        Isoelectric Point: 6.8793

>NTDB_id=133342 PN96_RS13735 WP_020333544.1 2960795..2961904(+) (dprA) [Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 strain ATCC 14048]
MKPLNENDLVAWLKLSCLPGIGGVKLNKLLAKDTPRNIINSSHEYLQRLGLSQKQLQAWTSADKEVEACLNWKEIASNHH
ILTLDDPLYPPLLKQIVAPPPLLFLQGDPTCLSQPQIAIVGSRNASVDGLQYARHFAADFVSNDLIVTSGLALGIDGHAH
DGALQAGGKTIAVLGSGLAHIYPARHRGLAQRVADSGALISEFRPNAKPRPEHFPRRNRIISGLSLGVFVVEAAEKSGSL
ITARYALEQGREVFALPASINAKNASGGNHLIRNGACLVEKTKDVLDEIQSLLDWSVNQSRDLFSTLIDEEELPFPQLLA
NVGNEATPVDILASRTNIPVQEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1110 bp        

>NTDB_id=133342 PN96_RS13735 WP_020333544.1 2960795..2961904(+) (dprA) [Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 strain ATCC 14048]
ATGAAACCACTCAATGAGAATGACCTTGTTGCCTGGCTGAAGCTAAGTTGCTTGCCAGGCATAGGCGGGGTCAAGCTGAA
TAAGTTACTTGCAAAAGACACGCCTCGAAACATCATCAACTCCTCTCATGAATACCTGCAGCGCCTTGGACTAAGTCAGA
AGCAACTTCAGGCTTGGACGTCAGCCGATAAAGAAGTTGAAGCTTGCCTCAATTGGAAAGAGATCGCTTCGAACCACCAT
ATTCTGACTTTAGATGATCCGCTTTACCCTCCGCTACTTAAACAGATTGTTGCACCGCCGCCCCTGTTGTTTTTGCAAGG
CGATCCTACGTGTTTATCTCAGCCTCAGATTGCTATAGTGGGAAGCCGTAACGCGAGTGTTGACGGATTACAGTACGCCC
GACACTTTGCTGCAGATTTCGTCAGTAATGATCTTATTGTAACCAGTGGATTAGCTTTGGGCATTGATGGTCATGCGCAT
GACGGAGCGTTGCAAGCGGGAGGAAAGACGATAGCAGTTCTTGGTTCTGGCTTAGCTCATATTTACCCAGCGCGGCACCG
GGGGTTGGCGCAGCGCGTCGCAGATAGCGGTGCACTGATTTCAGAATTTCGCCCCAATGCGAAACCAAGGCCGGAACACT
TTCCACGTCGCAACCGAATTATTAGTGGGTTATCTCTGGGGGTGTTTGTTGTCGAAGCGGCAGAGAAAAGCGGTTCTTTA
ATTACGGCCCGTTATGCGCTTGAGCAAGGACGAGAAGTGTTTGCTCTGCCCGCTTCTATTAATGCGAAAAATGCCAGTGG
CGGAAATCATTTGATTCGCAATGGTGCTTGCCTCGTAGAAAAGACAAAAGATGTACTCGATGAAATACAGTCATTACTTG
ATTGGTCTGTTAATCAGAGCAGAGATTTATTTTCTACCTTAATTGATGAAGAAGAATTGCCATTTCCTCAGCTGTTAGCT
AACGTAGGAAATGAGGCTACACCAGTTGATATTCTTGCAAGCAGGACCAATATACCTGTCCAGGAAGTCATGATGCAGCT
CTTAGAGCTTGAGCTCTCAGGGCACGTTGTTGCAGTTTCAGGTGGCTATATTCGAAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(78-280)

DprA winged helix domain (DprA_WH)

(317-362)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

82.114

100

0.821
  dprA Vibrio cholerae strain A1552

57.682

100

0.58
  dprA Glaesserella parasuis strain SC1401

45.283

100

0.455
  dprA Legionella pneumophila strain ERS1305867

47.04

86.992

0.409
  dprA Haemophilus influenzae Rd KW20

42.939

94.038

0.404
  dprA Neisseria meningitidis strain C311

35.516

100

0.382
  dprA Neisseria meningitidis MC58

35.516

100

0.382
  dprA Neisseria gonorrhoeae MS11

34.684

100

0.371
  dprA Neisseria gonorrhoeae strain FA1090

34.43

100

0.369

Multiple sequence alignment