Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   BF28_RS12135 Genome accession   NZ_CP009968
Coordinates   1788349..1789587 (+) Length   412 a.a.
NCBI ID   WP_000990709.1    Uniprot ID   Q636P5
Organism   Bacillus cereus E33L     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1783349..1794587
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BF28_RS12105 (BF28_1887) yfmH 1783401..1784687 (+) 1287 WP_000411946.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  BF28_RS12110 (BF28_1888) ymfI 1784791..1785504 (+) 714 WP_000759610.1 elongation factor P 5-aminopentanone reductase -
  BF28_RS12115 (BF28_1889) - 1785580..1785828 (+) 249 WP_000114454.1 DUF3243 domain-containing protein -
  BF28_RS12120 (BF28_1890) - 1785968..1786753 (+) 786 WP_000574107.1 DUF3388 domain-containing protein -
  BF28_RS12125 (BF28_1891) - 1786775..1787686 (+) 912 WP_000137485.1 helix-turn-helix domain-containing protein -
  BF28_RS12130 (BF28_1892) pgsA 1787750..1788328 (+) 579 WP_001052964.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  BF28_RS12135 (BF28_1893) cinA 1788349..1789587 (+) 1239 WP_000990709.1 competence/damage-inducible protein CinA Machinery gene
  BF28_RS12140 (BF28_1894) recA 1789732..1790340 (+) 609 Protein_1834 recombinase RecA -
  BF28_RS12145 (BF28_1895) - 1790668..1791090 (+) 423 Protein_1835 DNA recombination/repair protein RecA -
  BF28_RS12150 (BF28_1896) rny 1791572..1793134 (+) 1563 WP_000099773.1 ribonuclease Y -
  BF28_RS12155 (BF28_1897) - 1793300..1794094 (+) 795 WP_001221095.1 TIGR00282 family metallophosphoesterase -
  BF28_RS12160 (BF28_1898) spoVS 1794243..1794503 (+) 261 WP_000404341.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 45368.62 Da        Isoelectric Point: 5.0308

>NTDB_id=133233 BF28_RS12135 WP_000990709.1 1788349..1789587(+) (cinA) [Bacillus cereus E33L]
MNAEIIAVGTELLLGQIANTNAQFLSEKLASIGINVYYHTVVGDNNKRLQQAIEVAEERADMLIFTGGLGPTKDDLTKET
IASSLAEELVYDEKALASIGDYFKRTGREFTENNKKQALVLDGATVFANDHGMAPGMGLNKNGKVYILLPGPPKEMKPMY
VSYVEPFLRNFTTGENIYSRVLRFFGIGESQLEVKVQDLIDGQTNPTIAPLANDGEVTLRLTAKHQNVDEAEKLIQHVED
LILERVGEFFYGYDQEFLHYKAIELLKKKGLTLACAESLTGGLFGNQVTESAGVSSVFKGGVICYHNDVKQHVLHVPEEV
LSTDGAVSKECARYLAENVKELLKADIGISFTGVAGPDASEHKEPGTVFVGLAIKDEPTVVFPLNLSGSRQQIRERSAKY
GFYHLYKKLEEI

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=133233 BF28_RS12135 WP_000990709.1 1788349..1789587(+) (cinA) [Bacillus cereus E33L]
ATGAATGCTGAAATCATTGCGGTTGGAACAGAATTATTACTTGGACAAATTGCAAATACGAACGCCCAGTTTTTGTCTGA
AAAGTTAGCTTCAATTGGAATTAACGTGTACTACCATACTGTAGTTGGTGATAATAACAAGCGACTGCAGCAGGCGATTG
AAGTTGCAGAGGAACGTGCGGATATGCTCATTTTCACAGGTGGATTAGGACCGACGAAAGATGATTTAACGAAGGAAACA
ATAGCGTCTAGCTTAGCGGAAGAGCTTGTATATGATGAAAAGGCATTAGCATCAATAGGCGATTACTTTAAGCGAACAGG
TCGAGAGTTCACGGAGAATAATAAAAAGCAGGCGCTCGTTTTGGATGGAGCAACTGTATTTGCAAATGATCACGGTATGG
CACCTGGTATGGGATTAAATAAGAACGGAAAAGTTTATATTTTATTACCAGGACCACCGAAAGAAATGAAGCCGATGTAT
GTAAGTTATGTGGAGCCTTTTTTACGTAACTTTACAACAGGAGAAAACATTTATTCTCGTGTGCTTCGCTTTTTCGGAAT
TGGGGAATCTCAATTAGAGGTAAAAGTTCAAGATTTAATTGATGGACAAACGAATCCGACAATTGCCCCGCTTGCGAATG
ATGGAGAAGTGACATTACGTTTAACTGCTAAACATCAAAATGTTGATGAAGCAGAGAAACTCATTCAGCATGTGGAAGAT
TTGATTTTAGAAAGAGTAGGAGAATTTTTCTACGGGTATGACCAAGAGTTTCTGCATTATAAGGCGATAGAGTTATTGAA
GAAAAAAGGATTAACTTTAGCGTGTGCGGAAAGTTTAACAGGTGGTCTCTTCGGTAATCAAGTAACAGAAAGTGCTGGTG
TGTCTTCCGTATTTAAGGGCGGTGTCATTTGTTATCATAATGATGTGAAGCAACATGTTTTACATGTACCTGAGGAAGTG
TTGTCTACTGACGGTGCAGTTAGTAAAGAATGTGCCCGTTATCTTGCTGAAAATGTTAAAGAATTATTAAAAGCGGATAT
CGGGATTAGTTTCACTGGGGTAGCAGGACCGGATGCTTCAGAACATAAAGAACCGGGAACAGTATTTGTTGGATTGGCGA
TTAAAGATGAACCAACTGTAGTCTTTCCTCTTAATTTAAGTGGAAGTCGCCAACAAATTAGAGAACGCTCAGCGAAATAT
GGATTTTATCATTTATATAAAAAGCTAGAAGAAATATAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Damage-inducible protein CinA KH domain (CinA_KH)

(179-252)

Competence-damaged protein (CinA)

(258-408)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q636P5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

58.981

100

0.59
  cinA Streptococcus mitis SK321

47.255

100

0.481
  cinA Streptococcus pneumoniae TIGR4

47.017

100

0.478
  cinA Streptococcus pneumoniae Rx1

46.539

100

0.473
  cinA Streptococcus pneumoniae R6

46.539

100

0.473
  cinA Streptococcus pneumoniae D39

46.301

100

0.471
  cinA Streptococcus mitis NCTC 12261

46.301

100

0.471
  cinA Streptococcus mutans UA159

45.567

98.544

0.449
  cinA Streptococcus suis isolate S10

41.27

91.748

0.379

Multiple sequence alignment