Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   FORC4_RS15285 Genome accession   NZ_CP009847
Coordinates   3306825..3307937 (-) Length   370 a.a.
NCBI ID   WP_029802048.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain FORC_004     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3301825..3312937
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC4_RS15255 (FORC4_2880) hemF 3302286..3303203 (-) 918 WP_029806385.1 oxygen-dependent coproporphyrinogen oxidase -
  FORC4_RS15260 (FORC4_2881) - 3303251..3303808 (-) 558 WP_015297509.1 L-threonylcarbamoyladenylate synthase -
  FORC4_RS15265 (FORC4_2882) purE 3304008..3304493 (+) 486 WP_005394016.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  FORC4_RS15270 (FORC4_2883) - 3304498..3305625 (+) 1128 WP_029802047.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  FORC4_RS15275 (FORC4_2884) - 3305695..3306264 (-) 570 WP_021449061.1 type I DNA topoisomerase -
  FORC4_RS15280 (FORC4_2885) - 3306343..3306822 (-) 480 WP_005461440.1 DUF494 family protein -
  FORC4_RS15285 (FORC4_2886) dprA 3306825..3307937 (-) 1113 WP_029802048.1 DNA-processing protein DprA Machinery gene
  FORC4_RS15290 (FORC4_2887) - 3307921..3309015 (-) 1095 WP_025636856.1 LysM peptidoglycan-binding domain-containing protein -
  FORC4_RS15295 (FORC4_2888) def 3309154..3309672 (+) 519 WP_005461416.1 peptide deformylase -
  FORC4_RS15300 (FORC4_2889) fmt 3309706..3310653 (+) 948 WP_029802049.1 methionyl-tRNA formyltransferase -
  FORC4_RS15305 (FORC4_2890) rsmB 3310734..3312017 (+) 1284 WP_057619664.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 39884.53 Da        Isoelectric Point: 6.5879

>NTDB_id=132575 FORC4_RS15285 WP_029802048.1 3306825..3307937(-) (dprA) [Vibrio parahaemolyticus strain FORC_004]
MKPRNNDSDLAAWLKLSCLPGIGGVKMNKLLAKDTPRNIINSSSDQLYQLGLTNKQLQAWASADKEVDACLTWLATSTNH
HILTLADPLYPPLLKQVVAPPPLLFVEGNPTFLSQPQIAMVGSRNASFDGLHHARQFAAELAQQELIVTSGLALGIDGHA
HDGALQAGGKTIAVLGSGLEHIYPARHRGLARRVTESGALVSEFRPNAKPRAENFPRRNRIISGLSLGVLVVEAAEKSGS
LITARYALEQGREVFALPASINARNASGGNQLIRNGACLVEKTQDILDEIQSLLDWSVNQSIDLFSTLNDEEELPFPQLL
ANVGSEATPVDILANRTNIPVQEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=132575 FORC4_RS15285 WP_029802048.1 3306825..3307937(-) (dprA) [Vibrio parahaemolyticus strain FORC_004]
ATGAAACCACGCAATAACGACAGTGACCTTGCTGCCTGGCTTAAGCTGAGTTGCTTGCCAGGCATCGGTGGGGTCAAAAT
GAATAAGCTGCTCGCCAAAGATACGCCTCGCAATATCATCAATTCCTCTTCTGATCAGCTCTATCAATTGGGTTTGACGA
ACAAACAGTTGCAAGCTTGGGCTTCGGCCGATAAAGAGGTCGATGCTTGTTTAACGTGGCTAGCCACTTCTACAAATCAT
CACATTCTGACGCTGGCCGATCCTTTATATCCCCCTTTACTCAAGCAAGTTGTCGCTCCGCCTCCGTTGTTATTTGTCGA
GGGGAATCCTACCTTTTTATCGCAACCACAAATTGCCATGGTGGGCAGCCGTAACGCCAGTTTTGATGGTTTACACCATG
CTCGTCAATTTGCGGCAGAGTTGGCTCAGCAAGAATTGATTGTCACTAGCGGCTTAGCGCTTGGGATTGATGGCCATGCT
CATGATGGTGCGCTACAAGCGGGTGGTAAGACGATAGCTGTGCTCGGGTCTGGTTTAGAACATATTTATCCTGCTCGTCA
TCGTGGTTTAGCGCGGCGAGTAACAGAGAGTGGCGCACTGGTTTCTGAGTTTCGCCCCAATGCCAAGCCTCGCGCAGAAA
ACTTTCCGCGTCGAAACCGTATCATAAGTGGCTTATCGTTAGGTGTGTTAGTGGTGGAAGCGGCCGAGAAAAGTGGCTCG
CTTATTACCGCGCGTTATGCCCTTGAGCAAGGGCGAGAAGTGTTTGCGTTGCCGGCCTCAATTAATGCTCGCAATGCTAG
TGGTGGTAACCAATTGATTCGCAACGGTGCCTGCCTCGTAGAGAAAACCCAAGATATCCTCGATGAAATACAGTCTTTAC
TCGATTGGTCTGTTAATCAGAGTATCGATTTATTTTCTACGCTAAATGATGAAGAAGAATTGCCATTTCCTCAGCTGTTA
GCTAACGTAGGAAGTGAAGCTACACCGGTTGATATTCTTGCAAACAGGACCAATATACCTGTCCAAGAAGTCATGATGCA
GCTCTTAGAGCTTGAGCTCTCTGGGCATGTTGTTGCGGTTTCAGGTGGCTATATTCGAAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(77-281)

DprA winged helix domain (DprA_WH)

(318-363)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

84.054

100

0.841
  dprA Vibrio cholerae strain A1552

58.919

100

0.589
  dprA Glaesserella parasuis strain SC1401

47.185

100

0.476
  dprA Legionella pneumophila strain ERS1305867

47.546

88.108

0.419
  dprA Haemophilus influenzae Rd KW20

45.994

91.081

0.419
  dprA Neisseria meningitidis strain C311

37.949

100

0.4
  dprA Neisseria meningitidis MC58

37.949

100

0.4
  dprA Neisseria gonorrhoeae MS11

36.082

100

0.378
  dprA Neisseria gonorrhoeae strain FA1090

35.825

100

0.376

Multiple sequence alignment