Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   FORC6_RS15660 Genome accession   NZ_CP009765
Coordinates   3327011..3328123 (-) Length   370 a.a.
NCBI ID   WP_060658501.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain FORC_006     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3322011..3333123
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC6_RS15630 (FORC6_3001) hemF 3322473..3323390 (-) 918 WP_060658499.1 oxygen-dependent coproporphyrinogen oxidase -
  FORC6_RS15635 (FORC6_3002) - 3323438..3323995 (-) 558 WP_021483953.1 L-threonylcarbamoyladenylate synthase -
  FORC6_RS15640 (FORC6_3003) purE 3324195..3324680 (+) 486 WP_005394016.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  FORC6_RS15645 (FORC6_3004) - 3324685..3325812 (+) 1128 WP_015297510.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  FORC6_RS15650 (FORC6_3005) - 3325881..3326450 (-) 570 WP_005386647.1 type I DNA topoisomerase -
  FORC6_RS15655 (FORC6_3007) - 3326529..3327008 (-) 480 WP_005461440.1 DUF494 family protein -
  FORC6_RS15660 (FORC6_3008) dprA 3327011..3328123 (-) 1113 WP_060658501.1 DNA-processing protein DprA Machinery gene
  FORC6_RS15665 (FORC6_3009) - 3328107..3329201 (-) 1095 WP_005461388.1 LysM peptidoglycan-binding domain-containing protein -
  FORC6_RS15670 (FORC6_3010) def 3329340..3329858 (+) 519 WP_005461416.1 peptide deformylase -
  FORC6_RS15675 (FORC6_3011) fmt 3329892..3330839 (+) 948 WP_005461453.1 methionyl-tRNA formyltransferase -
  FORC6_RS15680 (FORC6_3012) rsmB 3330920..3332203 (+) 1284 WP_005394040.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 39841.46 Da        Isoelectric Point: 6.4133

>NTDB_id=132017 FORC6_RS15660 WP_060658501.1 3327011..3328123(-) (dprA) [Vibrio parahaemolyticus strain FORC_006]
MKPRNNDSDLAAWLKLSCLPGIGGVKMNKLLAKDTPRNIINSSSEQLYQLGLTNKQLQAWASADKEVDACLTWLATSTNH
HILTLADPLYPPLLKQVVAPPPLLFVEGNPTFLSQAQIAMVGSRNASFDGLHHARQFAAELAQQELIVTSGLALGIDGHA
HDGALQAGGKTIAVLGSGLEHIYPARHRGLAQRVAENGALVSEFRPNAKPRAENFPRRNRIISGLSLGVLVVEAAEKSGS
LITARYALEQGREVFALPASINARNASGGNQLIRNGACLVEKTQDILDEIQSLLDWSVNQSIDLFSTLNDEEELPFPQLL
ANVGSEATPVDILANRTNIPVQEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=132017 FORC6_RS15660 WP_060658501.1 3327011..3328123(-) (dprA) [Vibrio parahaemolyticus strain FORC_006]
ATGAAACCACGCAATAACGACAGTGACCTTGCTGCCTGGCTTAAGCTGAGTTGCTTGCCAGGCATCGGTGGGGTCAAAAT
GAATAAGCTGCTCGCCAAAGATACGCCTCGCAATATCATCAATTCCTCTTCTGAACAGCTTTATCAATTGGGTTTGACGA
ACAAACAGTTGCAAGCTTGGGCTTCGGCCGATAAAGAGGTCGATGCTTGTTTAACGTGGCTAGCCACTTCTACAAATCAT
CACATTCTGACGCTGGCCGATCCTTTATATCCCCCTTTACTCAAGCAAGTTGTCGCTCCGCCTCCGTTGTTATTTGTCGA
GGGGAATCCTACCTTTTTATCGCAAGCACAAATAGCCATGGTGGGCAGCCGTAACGCCAGTTTTGATGGTTTACACCATG
CACGTCAATTTGCAGCAGAGTTGGCTCAACAAGAATTGATTGTCACTAGCGGCTTAGCGCTTGGGATTGATGGCCATGCT
CATGATGGTGCGCTACAAGCGGGTGGTAAGACGATAGCTGTGCTGGGGTCTGGTTTAGAACATATTTATCCTGCTCGTCA
TCGTGGCTTAGCGCAGCGAGTAGCAGAGAATGGCGCACTGGTTTCTGAGTTTCGCCCCAATGCCAAGCCTCGCGCAGAAA
ACTTTCCGCGTCGAAACCGTATTATTAGCGGCTTATCGTTAGGTGTGTTAGTGGTGGAAGCGGCCGAGAAAAGTGGCTCG
CTTATTACCGCGCGTTATGCCCTTGAGCAAGGGCGAGAAGTGTTTGCGCTGCCGGCCTCAATTAATGCTCGCAATGCTAG
TGGTGGTAACCAATTGATTCGCAACGGTGCCTGCCTCGTAGAGAAAACCCAAGATATCCTCGATGAAATACAGTCTTTAC
TCGATTGGTCTGTTAATCAAAGTATCGATTTATTTTCTACGCTAAATGATGAAGAAGAATTGCCATTTCCTCAGCTGTTA
GCTAACGTAGGAAGTGAAGCTACACCGGTTGATATTCTTGCAAACAGGACCAATATACCTGTCCAAGAAGTCATGATGCA
GCTCTTAGAGCTTGAGCTCTCTGGGCATGTTGTTGCGGTTTCAGGTGGCTATATTCGAAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(318-363)

DNA recombination-mediator protein A (DNA_processg_A)

(77-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

84.865

100

0.849
  dprA Vibrio cholerae strain A1552

58.649

100

0.586
  dprA Glaesserella parasuis strain SC1401

46.649

100

0.47
  dprA Haemophilus influenzae Rd KW20

46.588

91.081

0.424
  dprA Legionella pneumophila strain ERS1305867

47.239

88.108

0.416
  dprA Neisseria meningitidis strain C311

38.205

100

0.403
  dprA Neisseria meningitidis MC58

38.205

100

0.403
  dprA Neisseria gonorrhoeae MS11

36.34

100

0.381
  dprA Neisseria gonorrhoeae strain FA1090

36.082

100

0.378

Multiple sequence alignment