Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   BF29_RS01200 Genome accession   NZ_CP009709
Coordinates   236542..237774 (+) Length   410 a.a.
NCBI ID   WP_029141541.1    Uniprot ID   A0A8B4BQ25
Organism   Heyndrickxia coagulans DSM     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 231542..242774
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BF29_RS01175 (BF29_230) ymfI 232652..233374 (+) 723 WP_026104883.1 elongation factor P 5-aminopentanone reductase -
  BF29_RS01180 (BF29_231) - 233571..233831 (+) 261 WP_013859159.1 DUF3243 domain-containing protein -
  BF29_RS01185 (BF29_232) - 234023..234814 (+) 792 WP_017554614.1 DUF3388 domain-containing protein -
  BF29_RS01190 (BF29_233) - 234831..235736 (+) 906 WP_029141542.1 helix-turn-helix domain-containing protein -
  BF29_RS01195 (BF29_234) pgsA 235792..236370 (+) 579 WP_019721121.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  BF29_RS01200 (BF29_235) cinA 236542..237774 (+) 1233 WP_029141541.1 competence/damage-inducible protein A Machinery gene
  BF29_RS01205 (BF29_236) recA 238044..239111 (+) 1068 WP_029141540.1 recombinase RecA Machinery gene
  BF29_RS01210 (BF29_237) rny 239586..241148 (+) 1563 WP_029141539.1 ribonuclease Y -
  BF29_RS01215 (BF29_238) - 241235..242035 (+) 801 WP_013859168.1 TIGR00282 family metallophosphoesterase -
  BF29_RS01220 (BF29_239) spoVS 242406..242666 (+) 261 WP_013859169.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 44992.65 Da        Isoelectric Point: 5.3574

>NTDB_id=131470 BF29_RS01200 WP_029141541.1 236542..237774(+) (cinA) [Heyndrickxia coagulans DSM]
MNAEIIAVGSELLLGQITNTNATFIAAQLAEIGVDVYYQTVVGDNAERLEAAIRTAEDRADLLIFTGGLGPTKDDLTKET
IASHIEKKLVTDEDAMRSIEQFFIRTKRKMTENNKKQALVIEGSKVFPNDHGMAPGMLAKSRNHYYLLLPGPPHELEPMF
IHYASPAIQDELETIEKIESRVLRFFGIGESQLETEIRQILETQSNPTVAPLAKEGEVTLRITAKHQSVATANQMIDQVE
KEILQIAGSYFYGYNDTTLMEALLEKLSEKQLTLACAESLTAGKFAAEMASIQGVSTMLKGGVVVYTNEAKMKLAKVKKE
TLDKYGAVSSQCAKELAENIRSIMDADIGISFTGVAGPDPLEGHPPGTVWIGIAIKGKETAAYLLELSGSRNNVRTRSVK
YGCWHLLKLL

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=131470 BF29_RS01200 WP_029141541.1 236542..237774(+) (cinA) [Heyndrickxia coagulans DSM]
GTGAATGCCGAAATAATTGCAGTCGGTTCGGAACTTTTGCTTGGCCAGATCACCAATACAAACGCCACATTTATTGCTGC
GCAATTGGCGGAAATCGGCGTGGATGTGTATTATCAGACCGTTGTCGGCGATAACGCAGAGCGGCTCGAAGCGGCAATCC
GTACAGCGGAGGACCGCGCCGATTTATTGATTTTTACTGGCGGGCTCGGTCCGACAAAGGATGATTTAACAAAAGAAACG
ATTGCATCGCATATCGAAAAAAAACTGGTCACAGACGAAGATGCCATGCGTTCCATCGAACAGTTTTTTATCCGTACAAA
ACGAAAAATGACGGAAAACAACAAAAAGCAGGCGCTTGTCATTGAAGGCTCGAAAGTGTTTCCGAATGACCACGGCATGG
CGCCGGGCATGCTGGCCAAAAGTCGAAACCACTATTACTTGCTGCTCCCCGGCCCGCCGCATGAACTGGAACCGATGTTT
ATCCATTATGCCAGTCCCGCGATCCAGGATGAACTGGAAACGATCGAAAAAATCGAATCGCGCGTTCTCCGTTTCTTCGG
GATCGGCGAATCCCAACTGGAAACAGAAATCCGCCAAATATTGGAAACCCAGAGCAATCCGACTGTTGCTCCGCTTGCGA
AAGAAGGGGAAGTGACACTCAGGATTACGGCGAAACACCAGTCGGTGGCAACGGCGAACCAAATGATCGATCAAGTGGAA
AAAGAGATTTTGCAAATTGCCGGATCGTATTTTTACGGTTATAACGATACGACGTTAATGGAGGCCCTGCTTGAAAAACT
TTCAGAAAAACAGCTGACGCTGGCCTGCGCGGAAAGCCTGACTGCCGGCAAATTTGCAGCGGAAATGGCGTCCATCCAGG
GTGTCAGCACGATGCTGAAAGGCGGCGTTGTTGTCTATACGAACGAAGCGAAGATGAAGCTTGCCAAAGTGAAAAAAGAA
ACACTTGACAAGTACGGCGCCGTCAGCAGCCAGTGTGCAAAAGAACTGGCGGAAAATATCCGCAGCATCATGGATGCCGA
CATTGGCATCAGTTTTACAGGTGTGGCCGGCCCGGACCCCCTTGAAGGCCATCCGCCGGGAACCGTGTGGATCGGCATTG
CCATAAAAGGGAAAGAAACGGCCGCCTATCTGTTGGAACTTTCCGGATCCCGGAACAACGTCCGCACGAGATCAGTGAAA
TACGGCTGCTGGCATTTGCTGAAACTGCTTTAG

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Competence-damaged protein (CinA)

(257-408)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A8B4BQ25

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

56.373

99.512

0.561
  cinA Streptococcus pneumoniae TIGR4

45.933

100

0.468
  cinA Streptococcus mitis SK321

45.694

100

0.466
  cinA Streptococcus pneumoniae Rx1

45.455

100

0.463
  cinA Streptococcus pneumoniae R6

45.455

100

0.463
  cinA Streptococcus mitis NCTC 12261

45.455

100

0.463
  cinA Streptococcus pneumoniae D39

45.215

100

0.461
  cinA Streptococcus mutans UA159

44.612

97.317

0.434
  cinA Streptococcus suis isolate S10

39.153

92.195

0.361

Multiple sequence alignment