Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   BG05_RS13005 Genome accession   NZ_CP009692
Coordinates   2132621..2133859 (+) Length   412 a.a.
NCBI ID   WP_003191012.1    Uniprot ID   A0AAP7WB59
Organism   Bacillus mycoides strain ATCC 6462     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 2127621..2138859
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BG05_RS12975 (BG05_2237) yfmH 2127647..2128933 (+) 1287 WP_002185081.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  BG05_RS12980 (BG05_2238) ymfI 2129047..2129760 (+) 714 WP_002014593.1 elongation factor P 5-aminopentanone reductase -
  BG05_RS12985 (BG05_2239) - 2129837..2130085 (+) 249 WP_000114449.1 DUF3243 domain-containing protein -
  BG05_RS12990 (BG05_2240) - 2130225..2131010 (+) 786 WP_000574107.1 DUF3388 domain-containing protein -
  BG05_RS12995 (BG05_2241) - 2131032..2131958 (+) 927 WP_016127442.1 helix-turn-helix domain-containing protein -
  BG05_RS13000 (BG05_2242) pgsA 2132022..2132600 (+) 579 WP_002014596.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  BG05_RS13005 (BG05_2243) cinA 2132621..2133859 (+) 1239 WP_003191012.1 competence/damage-inducible protein A Machinery gene
  BG05_RS13010 (BG05_2244) recA 2134002..2135033 (+) 1032 WP_002014599.1 recombinase RecA Machinery gene
  BG05_RS13015 (BG05_2245) rny 2135517..2137082 (+) 1566 WP_002014600.1 ribonuclease Y -
  BG05_RS13020 (BG05_2246) - 2137262..2138056 (+) 795 WP_002014601.1 TIGR00282 family metallophosphoesterase -
  BG05_RS13025 (BG05_2247) spoVS 2138206..2138466 (+) 261 WP_000404341.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 45582.90 Da        Isoelectric Point: 5.0274

>NTDB_id=131285 BG05_RS13005 WP_003191012.1 2132621..2133859(+) (cinA) [Bacillus mycoides strain ATCC 6462]
MNAEIIAVGTELLLGQIANTNAQFLSEKLASIGINVYYHTVVGDNNKRLQKAIELAEERADMLIFTGGLGPTKDDLTKET
IASSLDEELVYDEKALTSISDYFKRTGREFTENNKKQALVLNGSTVFANDHGMAPGMGLNTNGKVYILLPGPPKEMKPMY
ISYVEPFLCKFTTGENIYSRVLRFFGIGESQLEVKVQDLIDGQTNPTIAPLANDGEVTLRLTAKHHDADEAEKLIQHVED
LILERVGEFFYGYDQDFLHYKAIRLLKEKGLTLACAESLTGGLFGNQVTENAGVSSVFKGGVICYQNDVKQQILHVPEEV
LRTDSAVSKQCARYLAENVKELLKADIGISFTGVAGPDASEHKEPGTVFIGLVIKDEPAVVFSLNLSGSRQQIRERSTKY
GFYHLFKKLEEI

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=131285 BG05_RS13005 WP_003191012.1 2132621..2133859(+) (cinA) [Bacillus mycoides strain ATCC 6462]
ATGAATGCTGAAATTATTGCGGTTGGAACGGAATTATTACTTGGACAAATTGCAAATACAAATGCCCAGTTTTTATCTGA
AAAGTTAGCTTCAATCGGAATTAACGTGTACTACCATACTGTTGTTGGAGATAATAACAAGCGATTACAGAAGGCAATTG
AATTGGCTGAAGAACGAGCTGATATGCTCATTTTTACAGGTGGATTAGGACCGACAAAAGATGATTTAACGAAAGAAACA
ATAGCGTCTAGTTTAGATGAAGAGCTTGTGTATGATGAAAAGGCATTAACATCGATAAGCGATTATTTTAAGCGTACAGG
CCGTGAATTTACGGAGAATAATAAAAAGCAGGCGCTCGTTTTAAATGGATCGACTGTATTTGCGAATGATCACGGTATGG
CGCCTGGTATGGGATTAAATACGAACGGAAAAGTTTATATTTTATTACCAGGACCACCAAAAGAAATGAAGCCGATGTAT
ATAAGTTACGTAGAGCCTTTTTTATGTAAGTTTACAACGGGGGAAAATATTTATTCTCGTGTTCTTCGTTTTTTTGGTAT
TGGGGAATCTCAATTAGAGGTGAAAGTTCAAGATTTAATTGATGGACAAACGAACCCAACCATTGCACCACTTGCAAATG
ATGGCGAAGTGACATTACGTTTAACTGCCAAACATCATGATGCTGATGAGGCGGAGAAACTGATTCAGCATGTGGAAGAT
TTGATTTTAGAAAGAGTAGGAGAATTTTTCTACGGATATGACCAAGATTTCCTTCATTACAAGGCAATAAGGCTATTGAA
GGAAAAAGGGTTAACTTTAGCGTGTGCAGAAAGTTTAACAGGTGGTCTTTTTGGAAATCAAGTAACAGAAAATGCTGGTG
TTTCATCTGTATTTAAAGGCGGTGTCATTTGTTATCAAAATGATGTGAAGCAACAAATTTTACATGTACCTGAAGAAGTG
TTACGTACTGATAGCGCGGTTAGTAAACAGTGTGCTCGCTATCTTGCTGAAAATGTAAAGGAACTGTTAAAAGCAGATAT
CGGAATTAGTTTCACTGGGGTGGCAGGACCGGATGCTTCAGAGCATAAAGAACCAGGAACAGTATTTATTGGATTGGTGA
TTAAAGATGAACCAGCTGTAGTCTTCTCGCTTAATTTAAGTGGAAGTCGTCAACAAATTAGAGAACGCTCTACAAAATAT
GGATTTTATCATTTATTTAAAAAGCTAGAAGAGATATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(179-252)

Competence-damaged protein (CinA)

(259-408)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

58.981

100

0.59
  cinA Streptococcus mitis SK321

45.823

100

0.466
  cinA Streptococcus pneumoniae TIGR4

45.823

100

0.466
  cinA Streptococcus pneumoniae Rx1

45.346

100

0.461
  cinA Streptococcus pneumoniae R6

45.346

100

0.461
  cinA Streptococcus mitis NCTC 12261

45.107

100

0.459
  cinA Streptococcus pneumoniae D39

45.107

100

0.459
  cinA Streptococcus mutans UA159

46.305

98.544

0.456
  cinA Streptococcus suis isolate S10

41.489

91.262

0.379

Multiple sequence alignment