Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   AK40_RS15670 Genome accession   NZ_CP009641
Coordinates   2315966..2317204 (-) Length   412 a.a.
NCBI ID   WP_001994682.1    Uniprot ID   A0AAN0SS93
Organism   Bacillus cereus 03BB108     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 2310966..2322204
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AK40_RS15645 (AK40_2364) spoVS 2311049..2311309 (-) 261 WP_000404341.1 stage V sporulation protein SpoVS -
  AK40_RS15650 (AK40_2365) - 2311458..2312252 (-) 795 WP_001221095.1 TIGR00282 family metallophosphoesterase -
  AK40_RS15655 (AK40_2366) rny 2312418..2313980 (-) 1563 WP_000099773.1 ribonuclease Y -
  AK40_RS15660 (AK40_2367) - 2314463..2314885 (-) 423 Protein_2387 DNA recombination/repair protein RecA -
  AK40_RS15665 (AK40_2368) recA 2315213..2315821 (-) 609 Protein_2388 recombinase RecA -
  AK40_RS15670 (AK40_2369) cinA 2315966..2317204 (-) 1239 WP_001994682.1 competence/damage-inducible protein CinA Machinery gene
  AK40_RS15675 (AK40_2370) pgsA 2317225..2317803 (-) 579 WP_001052973.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  AK40_RS15680 (AK40_2371) - 2317867..2318778 (-) 912 WP_000137488.1 helix-turn-helix domain-containing protein -
  AK40_RS15685 (AK40_2372) - 2318800..2319585 (-) 786 WP_000574107.1 DUF3388 domain-containing protein -
  AK40_RS15690 (AK40_2373) - 2319725..2319973 (-) 249 WP_000114454.1 DUF3243 domain-containing protein -
  AK40_RS15695 (AK40_2374) ymfI 2320049..2320762 (-) 714 WP_001994686.1 elongation factor P 5-aminopentanone reductase -
  AK40_RS15700 (AK40_2375) yfmH 2320866..2322152 (-) 1287 WP_001994660.1 EF-P 5-aminopentanol modification-associated protein YfmH -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 45323.54 Da        Isoelectric Point: 4.8876

>NTDB_id=130886 AK40_RS15670 WP_001994682.1 2315966..2317204(-) (cinA) [Bacillus cereus 03BB108]
MNAEIIAVGTELLLGQIANTNAQFLSEKLAAIGINVYYHTVVGDNNKRLQQAIEVAEGRADMLIFTGGLGPTKDDLTKET
IASSLAEELVYDEKALASISDYFKRTGREFTENNKKQALVLDGATVFANDHGMAPGMGLNKNGKVYILLPGPPKEMKPMY
VSYVEPFLRNFTTGENIYSRVLRFFGIGESQLEVKVQDLIDGQTNPTIAPLANDGEVTLRLTAKHQNVDEAEKLIQHVED
LILERVGEFFYGYDQEFLHDKAIELLKKKGLTLACAESLTGGLFGNQVTESAGVSSVFKGGVICYHNDVKQHVLHVPEEV
LFTDGAVSKECARYLAENVKELLEADIGISFTGVAGPDASEHKEPGTVFVGLAIKDEPTVVFPLNLSGSRQQIRERSAKY
GFYHLYKKLEEI

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=130886 AK40_RS15670 WP_001994682.1 2315966..2317204(-) (cinA) [Bacillus cereus 03BB108]
ATGAATGCGGAGATTATTGCGGTTGGAACGGAATTATTACTTGGACAAATTGCAAATACAAATGCCCAGTTTTTATCTGA
AAAGTTAGCTGCAATTGGAATTAACGTGTACTACCATACTGTAGTTGGGGATAATAACAAGCGACTGCAGCAGGCGATTG
AAGTTGCAGAGGGACGTGCGGATATGCTCATTTTCACAGGTGGATTAGGACCGACGAAAGATGATTTAACGAAGGAAACA
ATAGCGTCTAGCTTAGCGGAAGAGCTTGTATATGATGAAAAGGCATTAGCATCAATAAGCGATTACTTTAAGCGAACAGG
TCGAGAGTTCACGGAGAATAATAAAAAGCAGGCGCTCGTTTTGGATGGAGCAACTGTATTTGCAAATGATCACGGTATGG
CACCTGGTATGGGATTAAATAAGAACGGAAAAGTTTATATTTTATTACCAGGACCACCGAAAGAAATGAAGCCAATGTAT
GTAAGTTATGTGGAGCCTTTTTTACGTAACTTTACAACAGGAGAAAACATTTATTCTCGCGTGCTTCGCTTTTTCGGAAT
TGGGGAATCTCAATTAGAGGTGAAAGTTCAAGATTTAATTGATGGACAAACGAATCCGACAATTGCCCCGCTTGCGAATG
ATGGAGAAGTGACATTACGTTTAACTGCTAAACATCAAAATGTTGATGAAGCAGAGAAACTCATTCAGCATGTGGAAGAT
TTGATTTTAGAAAGAGTAGGAGAATTTTTCTACGGGTATGACCAAGAGTTTCTGCATGATAAGGCGATAGAGTTATTGAA
GAAAAAAGGATTAACTTTAGCGTGTGCGGAAAGTTTAACAGGTGGTCTCTTCGGTAATCAAGTAACAGAAAGTGCTGGTG
TGTCTTCCGTATTTAAAGGTGGTGTCATTTGTTATCATAATGACGTGAAGCAGCATGTTTTACATGTACCTGAGGAAGTG
TTGTTTACTGACGGTGCAGTTAGTAAAGAATGTGCTCGTTATCTTGCTGAAAATGTTAAAGAATTATTAGAAGCGGATAT
CGGGATTAGTTTCACTGGGGTAGCAGGACCGGATGCTTCAGAACATAAAGAACCGGGAACAGTATTTGTTGGATTGGCGA
TTAAAGATGAACCAACTGTAGTCTTTCCTCTTAATTTAAGTGGAAGTCGCCAACAAATTAGAGAACGCTCAGCGAAATAT
GGATTTTATCATTTATATAAAAAGCTAGAAGAAATATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(179-252)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Competence-damaged protein (CinA)

(257-408)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

58.738

100

0.587
  cinA Streptococcus mitis SK321

47.255

100

0.481
  cinA Streptococcus pneumoniae TIGR4

47.017

100

0.478
  cinA Streptococcus pneumoniae Rx1

46.539

100

0.473
  cinA Streptococcus pneumoniae R6

46.539

100

0.473
  cinA Streptococcus pneumoniae D39

46.301

100

0.471
  cinA Streptococcus mitis NCTC 12261

46.301

100

0.471
  cinA Streptococcus mutans UA159

45.32

98.544

0.447
  cinA Streptococcus suis isolate S10

41.27

91.748

0.379

Multiple sequence alignment