Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   IX92_RS15780 Genome accession   NZ_CP009617
Coordinates   3373032..3374147 (-) Length   371 a.a.
NCBI ID   WP_043009568.1    Uniprot ID   -
Organism   Vibrio coralliilyticus strain RE98     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3368032..3379147
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IX92_RS15750 (IX92_15750) hemF 3368585..3369502 (-) 918 WP_043009564.1 oxygen-dependent coproporphyrinogen oxidase -
  IX92_RS15755 (IX92_15755) - 3369524..3370081 (-) 558 WP_043009565.1 L-threonylcarbamoyladenylate synthase -
  IX92_RS15760 (IX92_15760) purE 3370278..3370763 (+) 486 WP_006957519.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  IX92_RS15765 (IX92_15765) - 3370768..3371901 (+) 1134 WP_043009566.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  IX92_RS15770 (IX92_15770) - 3371950..3372534 (-) 585 WP_043009567.1 type I DNA topoisomerase -
  IX92_RS15775 (IX92_15775) - 3372550..3373029 (-) 480 WP_006957516.1 DUF494 family protein -
  IX92_RS15780 (IX92_15780) dprA 3373032..3374147 (-) 1116 WP_043009568.1 DNA-processing protein DprA Machinery gene
  IX92_RS15785 (IX92_15785) def 3374398..3374919 (+) 522 WP_038514170.1 peptide deformylase -
  IX92_RS15790 (IX92_15790) fmt 3374942..3375889 (+) 948 WP_038163850.1 methionyl-tRNA formyltransferase -
  IX92_RS15795 (IX92_15795) rsmB 3375946..3377226 (+) 1281 WP_043009569.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  IX92_RS15800 (IX92_15800) trkA 3377276..3378652 (+) 1377 WP_006957511.1 Trk system potassium transporter TrkA -

Sequence

Protein


Download         Length: 371 a.a.        Molecular weight: 40408.11 Da        Isoelectric Point: 6.0442

>NTDB_id=130794 IX92_RS15780 WP_043009568.1 3373032..3374147(-) (dprA) [Vibrio coralliilyticus strain RE98]
MTKEELTAWLSLYFTPRIGPKTFQRLVAVDSPINIIDSSPETLRRLGFSDSQLDYLQHRAAEDIEACFEWQAESSARTIL
PLSDQRYPALLKQADAAPAILFVEGQLESLSQPQMAIVGSRNASIDGLNTARSFATQLVNQDMVVTSGLALGVDGYAHDG
ALNGNGQTIAVLGCGLNSVYPARHKKLAQRIVEQGALVSEFHPNVKPKADNFPRRNRIISGLSLGVLVIEAAEKSGSLIT
ARYAMEQGREVFAIPGSIHHPHARGCNLLIKQGACLVQQVSDITDEIDSLIRWSDVNKPPVQSDLFEQIDCKEELPFPQL
LANVGSKATPVDILASRTNIPVHEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1116 bp        

>NTDB_id=130794 IX92_RS15780 WP_043009568.1 3373032..3374147(-) (dprA) [Vibrio coralliilyticus strain RE98]
ATGACGAAAGAAGAACTGACGGCTTGGCTGAGCTTGTACTTTACGCCGCGGATTGGACCCAAAACGTTTCAGCGTTTGGT
GGCGGTAGATTCTCCAATTAATATTATTGACTCTTCACCCGAGACATTACGCCGCTTAGGCTTTTCCGACTCGCAACTGG
ACTATCTCCAACACCGAGCTGCCGAGGATATTGAGGCGTGTTTCGAGTGGCAAGCAGAATCAAGTGCCAGAACCATTCTA
CCTTTGAGTGATCAGCGTTATCCGGCACTACTGAAACAGGCTGACGCTGCGCCAGCAATACTGTTTGTTGAAGGTCAGCT
AGAGAGTCTGTCTCAGCCACAAATGGCGATTGTGGGCAGTCGCAATGCCAGTATTGATGGGCTTAACACCGCACGCAGCT
TTGCAACCCAGTTGGTGAATCAAGACATGGTCGTGACCAGCGGCTTGGCGCTAGGCGTTGATGGTTATGCTCATGATGGG
GCACTCAATGGTAATGGCCAAACCATCGCCGTGCTCGGTTGTGGTTTAAATTCTGTGTATCCGGCACGGCATAAGAAGTT
AGCTCAACGAATCGTTGAACAAGGGGCGTTGGTGTCTGAGTTCCATCCTAATGTGAAGCCAAAAGCCGATAATTTTCCAC
GCCGAAATCGAATCATTAGTGGTTTGTCATTGGGCGTTTTAGTCATAGAAGCGGCAGAGAAAAGCGGCTCTCTGATCACC
GCTCGCTATGCGATGGAACAAGGTCGCGAAGTGTTTGCGATTCCCGGCTCGATTCATCATCCCCATGCGAGAGGCTGTAA
CTTGTTGATAAAACAGGGAGCGTGCTTGGTTCAACAGGTTTCTGACATAACCGATGAAATTGACAGTCTGATTCGCTGGT
CTGATGTTAATAAGCCGCCAGTGCAAAGCGATCTATTTGAACAAATTGATTGCAAAGAAGAATTGCCATTTCCTCAGCTG
TTAGCTAACGTAGGAAGTAAGGCTACACCAGTTGATATTCTTGCAAGCAGGACCAATATACCTGTGCATGAAGTCATGAT
GCAGCTCTTGGAGCTTGAGCTCTCAGGGCATGTTGTTGCGGTTTCCGGTGGCTATATTCGAAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(319-364)

DNA recombination-mediator protein A (DNA_processg_A)

(78-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

63.215

98.922

0.625
  dprA Vibrio cholerae strain A1552

57.951

100

0.58
  dprA Glaesserella parasuis strain SC1401

45.745

100

0.464
  dprA Legionella pneumophila strain ERS1305867

44.568

96.765

0.431
  dprA Neisseria meningitidis MC58

38.035

100

0.407
  dprA Neisseria meningitidis strain C311

38.035

100

0.407
  dprA Haemophilus influenzae Rd KW20

41.399

92.453

0.383
  dprA Acinetobacter baumannii D1279779

40.476

90.566

0.367
  dprA Acinetobacter baumannii strain A118

40.179

90.566

0.364

Multiple sequence alignment