Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   BF38_RS28075 Genome accession   NZ_CP009335
Coordinates   4806755..4807993 (-) Length   412 a.a.
NCBI ID   WP_000990712.1    Uniprot ID   A0A0B6BAH8
Organism   Bacillus thuringiensis strain HD1011     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 4801755..4812993
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BF38_RS28050 (BF38_4946) spoVS 4801838..4802098 (-) 261 WP_000404341.1 stage V sporulation protein SpoVS -
  BF38_RS28055 (BF38_4947) - 4802247..4803041 (-) 795 WP_001221095.1 TIGR00282 family metallophosphoesterase -
  BF38_RS28060 (BF38_4948) rny 4803207..4804769 (-) 1563 WP_000099773.1 ribonuclease Y -
  BF38_RS28065 (BF38_4949) - 4805252..4805674 (-) 423 Protein_4845 DNA recombination/repair protein RecA -
  BF38_RS28070 (BF38_4950) recA 4806002..4806610 (-) 609 Protein_4846 recombinase RecA -
  BF38_RS28075 (BF38_4951) cinA 4806755..4807993 (-) 1239 WP_000990712.1 competence/damage-inducible protein CinA Machinery gene
  BF38_RS28080 (BF38_4952) pgsA 4808014..4808592 (-) 579 WP_001052974.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  BF38_RS28085 (BF38_4953) - 4808656..4809567 (-) 912 WP_000137479.1 helix-turn-helix domain-containing protein -
  BF38_RS28090 (BF38_4954) - 4809589..4810374 (-) 786 WP_000574107.1 DUF3388 domain-containing protein -
  BF38_RS28095 (BF38_4955) - 4810514..4810762 (-) 249 WP_000114454.1 DUF3243 domain-containing protein -
  BF38_RS28100 (BF38_4956) ymfI 4810838..4811551 (-) 714 WP_000759617.1 elongation factor P 5-aminopentanone reductase -
  BF38_RS28105 (BF38_4957) yfmH 4811655..4812941 (-) 1287 WP_000411954.1 EF-P 5-aminopentanol modification-associated protein YfmH -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 45411.60 Da        Isoelectric Point: 4.8340

>NTDB_id=128702 BF38_RS28075 WP_000990712.1 4806755..4807993(-) (cinA) [Bacillus thuringiensis strain HD1011]
MNAEIIAVGTELLLGQIANTNAQFLSEKLASIGINVYYHTVVGDNNKRLQQAIEVAEERADMLIFTGGLGPTKDDLTKET
IASSLAEELVYDEKALASISDYFKRTGREFTENNKKQALVLDGATVFANDHGMAPGMGLNKNGKVYILLPGPPKEMKPMY
VSYVEPFLRNFTTGENIYSRVLRFFGIGESQLEVKVQDLIDGQTNPTIAPLANDGEVTLRLTAKHQNVDEAEKLIQHVED
LILERVGEFFYGYDQEFLHDKAIELLKKKGLTLACAESLTGGLFGNQVTESAGVSSVFKGGVICYHNDVKQHVLHVPEEV
LFTDGAVSKECARYLAENVKELLEADIGISFTGVAGPDASEHKEPGTVFVGLAIKDEPTVVFPLNLSGSRQQIRERSAKY
GFYHLYKKLEEI

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=128702 BF38_RS28075 WP_000990712.1 4806755..4807993(-) (cinA) [Bacillus thuringiensis strain HD1011]
ATGAATGCGGAGATTATTGCGGTTGGAACGGAATTATTACTTGGACAAATTGCAAATACAAATGCCCAGTTTTTATCTGA
AAAGTTAGCTTCAATTGGAATTAACGTGTACTACCATACTGTAGTTGGGGATAATAACAAGCGACTGCAGCAGGCGATTG
AAGTTGCAGAGGAACGTGCGGATATGCTCATTTTCACAGGTGGATTAGGACCGACGAAAGATGATTTAACGAAGGAAACA
ATAGCGTCTAGCTTAGCGGAAGAGCTTGTATATGATGAAAAGGCATTAGCATCAATAAGCGATTACTTTAAGCGAACAGG
TCGAGAGTTCACTGAGAATAATAAAAAGCAGGCGCTCGTTTTGGATGGAGCAACTGTATTTGCAAATGATCACGGTATGG
CACCTGGTATGGGATTAAATAAGAACGGAAAAGTTTATATTTTATTACCAGGACCACCGAAAGAAATGAAGCCAATGTAT
GTAAGTTATGTGGAGCCTTTTTTACGTAACTTTACAACAGGAGAAAACATTTATTCTCGCGTGCTTCGCTTTTTCGGAAT
TGGGGAATCTCAATTAGAGGTGAAAGTTCAAGATTTAATTGATGGACAAACGAATCCGACAATTGCCCCGCTTGCGAATG
ATGGAGAAGTGACATTACGTTTAACTGCTAAACATCAAAATGTTGATGAAGCAGAGAAACTCATTCAGCATGTGGAAGAT
TTGATTTTAGAAAGAGTAGGAGAATTTTTCTACGGGTATGACCAAGAGTTTCTGCATGATAAGGCGATAGAGTTATTGAA
GAAAAAAGGATTAACTTTAGCGTGTGCGGAAAGTTTAACAGGTGGTCTCTTCGGTAATCAAGTAACAGAAAGTGCTGGTG
TGTCTTCCGTATTTAAAGGTGGTGTCATTTGTTATCATAATGACGTGAAGCAGCATGTTTTACATGTACCTGAGGAAGTG
TTGTTTACTGACGGTGCAGTTAGTAAAGAATGTGCTCGTTATCTTGCTGAAAATGTTAAAGAATTATTAGAAGCGGATAT
CGGGATTAGTTTCACTGGGGTAGCAGGACCGGATGCTTCAGAACATAAAGAACCGGGAACAGTATTTGTTGGATTGGCGA
TTAAAGATGAACCAACTGTAGTCTTTCCTCTTAATTTAAGTGGAAGTCGCCAACAAATTAGAGAACGCTCAGCAAAATAT
GGATTTTATCATTTATATAAAAAGCTAGAAGAAATATAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(257-408)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Damage-inducible protein CinA KH domain (CinA_KH)

(179-252)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0B6BAH8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

58.981

100

0.59
  cinA Streptococcus mitis SK321

47.255

100

0.481
  cinA Streptococcus pneumoniae TIGR4

47.017

100

0.478
  cinA Streptococcus pneumoniae Rx1

46.539

100

0.473
  cinA Streptococcus pneumoniae R6

46.539

100

0.473
  cinA Streptococcus pneumoniae D39

46.301

100

0.471
  cinA Streptococcus mitis NCTC 12261

46.301

100

0.471
  cinA Streptococcus mutans UA159

45.567

98.544

0.449
  cinA Streptococcus suis isolate S10

41.27

91.748

0.379

Multiple sequence alignment