Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   AW22_RS05655 Genome accession   NZ_CP009300
Coordinates   838524..839762 (+) Length   412 a.a.
NCBI ID   WP_042512276.1    Uniprot ID   -
Organism   Bacillus cereus D17     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 833524..844762
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AW22_RS05625 (AW22_897) yfmH 833576..834862 (+) 1287 WP_001994660.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  AW22_RS05630 (AW22_898) ymfI 834966..835679 (+) 714 WP_001994686.1 elongation factor P 5-aminopentanone reductase -
  AW22_RS05635 (AW22_899) - 835755..836003 (+) 249 WP_000114454.1 DUF3243 domain-containing protein -
  AW22_RS05640 (AW22_900) - 836143..836928 (+) 786 WP_000574107.1 DUF3388 domain-containing protein -
  AW22_RS05645 (AW22_901) - 836950..837861 (+) 912 WP_000137488.1 helix-turn-helix domain-containing protein -
  AW22_RS05650 (AW22_902) pgsA 837925..838503 (+) 579 WP_001052973.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  AW22_RS05655 (AW22_903) cinA 838524..839762 (+) 1239 WP_042512276.1 competence/damage-inducible protein CinA Machinery gene
  AW22_RS05660 (AW22_904) recA 839907..840515 (+) 609 Protein_909 recombinase RecA -
  AW22_RS05665 (AW22_905) - 840843..841265 (+) 423 Protein_910 DNA recombination/repair protein RecA -
  AW22_RS05670 (AW22_906) rny 841748..843310 (+) 1563 WP_000099773.1 ribonuclease Y -
  AW22_RS05675 (AW22_907) - 843476..844270 (+) 795 WP_001221095.1 TIGR00282 family metallophosphoesterase -
  AW22_RS05680 (AW22_908) spoVS 844419..844679 (+) 261 WP_000404341.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 45351.59 Da        Isoelectric Point: 4.8876

>NTDB_id=128353 AW22_RS05655 WP_042512276.1 838524..839762(+) (cinA) [Bacillus cereus D17]
MNAEIIAVGTELLLGQIANTNAQFLSEKLAAIGINVYYHTVVGDNNKRLQQAIEVAEGRADMLIFTGGLGPTKDDLTKET
IASSLAEELVYDEKALASISDYFKRTGREFTENNKKQALVLDGATVFANDHGMAPGMGLNKNGKVYILLPGPPKEMKPMY
VSYVEPFLRNFTTGENIYSRVLRFFGIGESQLEVKVQDLIDGQTNPTIAPLANDGEVTLRLTAKHQNVDEAEKLIQHVED
LILERVGEFFYGYDQEFLHDKAIELLKKKGLTLACVESLTGGLFGNQVTESAGVSSVFKGGVICYHNDVKQHVLHVPEEV
LFTDGAVSKECARYLAENVKELLEADIGISFTGVAGPDASEHKEPGTVFVGLAIKDEPTVVFPLNLSGSRQQIRERSAKY
GFYHLYKKLEEI

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=128353 AW22_RS05655 WP_042512276.1 838524..839762(+) (cinA) [Bacillus cereus D17]
ATGAATGCGGAGATTATTGCGGTTGGAACGGAATTATTACTTGGACAAATTGCAAATACAAATGCCCAGTTTTTATCTGA
AAAGTTAGCTGCAATTGGAATTAACGTGTACTACCATACTGTAGTTGGGGATAATAACAAGCGACTGCAGCAGGCGATTG
AAGTTGCAGAGGGACGTGCGGATATGCTCATTTTCACAGGTGGATTAGGACCGACGAAAGATGATTTAACGAAGGAAACA
ATAGCGTCTAGCTTAGCGGAAGAGCTTGTATATGATGAAAAGGCATTAGCATCAATAAGCGATTACTTTAAGCGAACAGG
TCGAGAGTTCACGGAGAATAATAAAAAGCAGGCGCTCGTTTTGGATGGAGCAACTGTATTTGCAAATGATCACGGTATGG
CACCTGGTATGGGATTAAATAAGAACGGAAAAGTTTATATTTTATTACCAGGACCACCGAAAGAAATGAAGCCAATGTAT
GTAAGTTATGTGGAGCCTTTTTTACGTAACTTTACAACAGGAGAAAACATTTATTCTCGCGTGCTTCGCTTTTTCGGAAT
TGGGGAATCTCAATTAGAGGTGAAAGTTCAAGATTTAATTGATGGACAAACGAATCCGACAATTGCCCCGCTTGCGAATG
ATGGAGAAGTGACATTACGTTTAACTGCTAAACATCAAAATGTTGATGAAGCAGAGAAACTCATTCAGCATGTGGAAGAT
TTGATTTTAGAAAGAGTAGGAGAATTTTTCTACGGGTATGACCAAGAGTTTCTGCATGATAAGGCGATAGAGTTATTGAA
GAAAAAAGGATTAACTTTAGCGTGTGTGGAAAGTTTAACAGGTGGTCTCTTCGGTAATCAAGTAACAGAAAGTGCTGGTG
TGTCTTCCGTATTTAAAGGTGGTGTCATTTGTTATCATAATGACGTGAAGCAGCATGTTTTACATGTACCTGAGGAAGTG
TTGTTTACTGACGGTGCAGTTAGTAAAGAATGTGCTCGTTATCTTGCTGAAAATGTTAAAGAATTATTAGAAGCGGATAT
CGGGATTAGTTTCACTGGGGTAGCAGGACCGGATGCTTCAGAACATAAAGAACCGGGAACAGTATTTGTTGGATTGGCGA
TTAAAGATGAACCAACTGTAGTCTTTCCTCTTAATTTAAGTGGAAGTCGCCAACAAATTAGAGAACGCTCAGCGAAATAT
GGATTTTATCATTTATATAAAAAGCTAGAAGAAATATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(179-252)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Competence-damaged protein (CinA)

(257-408)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

58.293

99.515

0.58
  cinA Streptococcus mitis SK321

47.017

100

0.478
  cinA Streptococcus pneumoniae TIGR4

46.778

100

0.476
  cinA Streptococcus pneumoniae Rx1

46.301

100

0.471
  cinA Streptococcus pneumoniae R6

46.301

100

0.471
  cinA Streptococcus pneumoniae D39

46.062

100

0.468
  cinA Streptococcus mitis NCTC 12261

46.062

100

0.468
  cinA Streptococcus mutans UA159

45.074

98.544

0.444
  cinA Streptococcus suis isolate S10

41.534

91.748

0.381

Multiple sequence alignment