Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   JM49_RS04880 Genome accession   NZ_CP009290
Coordinates   1068553..1069770 (-) Length   405 a.a.
NCBI ID   WP_038575694.1    Uniprot ID   -
Organism   Pseudomonas chlororaphis subsp. aurantiaca strain JD37     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1063553..1074770
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JM49_RS04850 (JM49_04910) - 1065419..1065886 (+) 468 WP_016703672.1 hypothetical protein -
  JM49_RS04855 (JM49_04915) - 1065883..1066572 (+) 690 WP_038575688.1 energy-coupling factor ABC transporter permease -
  JM49_RS04860 (JM49_04920) - 1066638..1066853 (+) 216 WP_009050911.1 hypothetical protein -
  JM49_RS04865 (JM49_04925) yacG 1066858..1067061 (-) 204 WP_009045670.1 DNA gyrase inhibitor YacG -
  JM49_RS04870 (JM49_04930) coaE 1067058..1067681 (-) 624 WP_038575690.1 dephospho-CoA kinase -
  JM49_RS04875 (JM49_04935) pilD 1067678..1068550 (-) 873 WP_038575692.1 A24 family peptidase Machinery gene
  JM49_RS04880 (JM49_04940) pilC 1068553..1069770 (-) 1218 WP_038575694.1 type II secretion system F family protein Machinery gene
  JM49_RS04885 (JM49_04945) - 1070138..1070554 (+) 417 WP_038575696.1 pilin -
  JM49_RS04890 (JM49_04950) - 1070844..1071200 (+) 357 WP_038575698.1 BON domain-containing protein -
  JM49_RS04895 (JM49_04955) - 1071403..1074330 (-) 2928 WP_080748356.1 DUF748 domain-containing protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44400.14 Da        Isoelectric Point: 10.4090

>NTDB_id=128306 JM49_RS04880 WP_038575694.1 1068553..1069770(-) (pilC) [Pseudomonas chlororaphis subsp. aurantiaca strain JD37]
MAVKAAKVSVYLWEGTDRQGSKLRGELSGHTPSLIRAQLRKQGISPARVRKKSSSPFQRTPPIKARDISLFTRQLATLIK
AGVPLLQSFDIIAEGFDNPNMRKLLGELKQDIAAGSSFTSALRKRPRYFDELYCSLVDAGEQAGALETLLERVATYKEKS
ENLKTRIRKAMTYPLAVICVALVVTGILLVKVVPQFQSMFQGFGAQLPVFTQLVIALSEFVQHWWWLLAGALLLSVFGLR
HAHRRSPRFRHWLDAGLLKLPLVAPLLYKSAVARYARTLSTTFAAGVPLVEALGSVAGATGNQVFKHAVNRIRQDVATGM
QLHFSMRASGIFPGMAIQMTAIGEESGALDGMLEKVAIHYEEEVDTLVDTLSSLMEPVIMVVLGTLVGGLVVAMYLPIFQ
LGTAI

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=128306 JM49_RS04880 WP_038575694.1 1068553..1069770(-) (pilC) [Pseudomonas chlororaphis subsp. aurantiaca strain JD37]
ATGGCGGTCAAAGCAGCAAAAGTCAGTGTTTACCTGTGGGAAGGCACCGACAGGCAAGGCAGCAAACTGCGCGGCGAATT
GAGCGGCCATACCCCCTCGCTGATCAGGGCCCAGTTGCGCAAGCAAGGCATCAGCCCGGCCAGGGTCAGGAAGAAATCCA
GCTCGCCGTTCCAGCGCACACCTCCGATCAAGGCCCGCGACATCAGCCTGTTCACCCGACAGCTGGCGACCCTGATCAAG
GCCGGCGTACCGCTGCTGCAATCGTTCGACATCATTGCCGAGGGCTTCGATAACCCGAACATGCGCAAACTGCTGGGCGA
GCTGAAACAGGACATCGCCGCCGGCAGCAGCTTCACCAGCGCACTACGCAAGAGGCCGCGGTATTTCGACGAGCTGTACT
GCAGCCTGGTGGATGCCGGCGAGCAGGCCGGCGCCCTGGAAACCCTGCTGGAGCGGGTGGCGACCTACAAGGAAAAAAGC
GAAAACCTCAAGACCCGAATCCGCAAGGCCATGACCTATCCCCTGGCGGTGATCTGTGTGGCGCTGGTGGTCACGGGGAT
CCTGCTGGTCAAGGTGGTGCCGCAATTCCAGTCGATGTTCCAAGGCTTTGGCGCGCAACTGCCGGTATTCACCCAACTGG
TCATCGCCCTCTCGGAATTCGTGCAGCACTGGTGGTGGCTGCTGGCGGGAGCTCTGTTGCTCAGTGTGTTCGGCCTGCGC
CATGCCCACCGGCGCTCACCGCGCTTTCGCCACTGGCTGGACGCGGGCCTGCTGAAACTGCCGTTGGTGGCGCCGCTGCT
GTACAAGTCCGCGGTGGCCCGCTACGCCCGCACCTTGTCCACCACCTTCGCCGCCGGGGTACCGCTGGTGGAGGCCCTGG
GCTCGGTGGCCGGGGCCACCGGCAACCAGGTGTTCAAGCATGCGGTGAACCGCATCAGGCAGGACGTGGCGACCGGCATG
CAGTTGCACTTTTCCATGCGCGCGTCCGGCATTTTTCCCGGCATGGCCATCCAGATGACCGCCATCGGCGAAGAATCCGG
GGCCCTGGACGGCATGCTGGAAAAAGTCGCGATCCACTACGAGGAAGAGGTCGATACCCTGGTCGATACCCTGAGCAGTC
TCATGGAGCCCGTGATCATGGTAGTTTTGGGCACCCTCGTCGGCGGCCTGGTGGTCGCCATGTACTTACCCATCTTCCAA
CTCGGCACAGCGATCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

65.679

100

0.657
  pilC Acinetobacter baylyi ADP1

55.882

100

0.563
  pilC Acinetobacter baumannii D1279779

55.147

100

0.556
  pilC Legionella pneumophila strain ERS1305867

52.525

97.778

0.514
  pilG Neisseria gonorrhoeae MS11

42.289

99.259

0.42
  pilG Neisseria meningitidis 44/76-A

41.542

99.259

0.412
  pilC Vibrio cholerae strain A1552

42.092

96.79

0.407
  pilC Vibrio campbellii strain DS40M4

39.552

99.259

0.393

Multiple sequence alignment