Detailed information NTG0128305

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: JM49_RS04875
• Genome accession: NZ_CP009290
• Coordinates: 1067678..1068550 (-)
• Length: 290 a.a.
• NCBI ID: WP_038575692.1
• Uniprot ID: A0AAJ0ZPM1
• Organism: Pseudomonas chlororaphis subsp. aurantiaca strain JD37
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1062678..1073550

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JM49_RS04845 (JM49_04905)	-	1063528..1064964 (-)	1437	WP_038575686.1	undecaprenyl-phosphate glucose phosphotransferase	-
JM49_RS04850 (JM49_04910)	-	1065419..1065886 (+)	468	WP_016703672.1	hypothetical protein	-
JM49_RS04855 (JM49_04915)	-	1065883..1066572 (+)	690	WP_038575688.1	energy-coupling factor ABC transporter permease	-
JM49_RS04860 (JM49_04920)	-	1066638..1066853 (+)	216	WP_009050911.1	hypothetical protein	-
JM49_RS04865 (JM49_04925)	yacG	1066858..1067061 (-)	204	WP_009045670.1	DNA gyrase inhibitor YacG	-
JM49_RS04870 (JM49_04930)	coaE	1067058..1067681 (-)	624	WP_038575690.1	dephospho-CoA kinase	-
JM49_RS04875 (JM49_04935)	pilD	1067678..1068550 (-)	873	WP_038575692.1	A24 family peptidase	Machinery gene
JM49_RS04880 (JM49_04940)	pilC	1068553..1069770 (-)	1218	WP_038575694.1	type II secretion system F family protein	Machinery gene
JM49_RS04885 (JM49_04945)	-	1070138..1070554 (+)	417	WP_038575696.1	pilin	-
JM49_RS04890 (JM49_04950)	-	1070844..1071200 (+)	357	WP_038575698.1	BON domain-containing protein	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32054.16 Da
• Isoelectric Point: 7.9954

>NTDB_id=128305 JM49_RS04875 WP_038575692.1 1067678..1068550(-) (pilD) [Pseudomonas chlororaphis subsp. aurantiaca strain JD37]
MSLTEVLASYPLVFVASMLVLGLIVGSFLNVLIWRLPKMLERDWHAQARDILGLPVEPAGPTYNLLLPHSQCPHCAHSIR
PWENIPVFSYLLLRGRCSACQAPIGRRYPLVELTCGLASAFVAWHFGFGWQAVLMLLLSWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIVNGFELFVSLHDALWGAVAGYLCLWSVYWSFKLLTGKEGMGHGDFKLLAMFGAWGGWQILPMTLLLASLTG
ALAGIALLRRNRAQMSTPIPFGPFLAIAGWIALLWGGQITSSYLQFVGFR

Nucleotide

• Length: 873 bp

>NTDB_id=128305 JM49_RS04875 WP_038575692.1 1067678..1068550(-) (pilD) [Pseudomonas chlororaphis subsp. aurantiaca strain JD37]
ATGTCATTGACTGAGGTCCTGGCCAGCTACCCGCTGGTCTTCGTAGCATCGATGCTGGTCCTGGGACTGATTGTCGGCAG
CTTTCTCAATGTGCTGATCTGGCGTCTGCCAAAGATGCTCGAGCGCGACTGGCACGCCCAGGCCCGTGACATCCTGGGGC
TGCCCGTCGAGCCTGCCGGGCCGACCTACAACCTGCTGCTCCCGCACTCCCAGTGCCCTCACTGCGCACATTCGATCCGC
CCCTGGGAAAACATCCCGGTGTTCAGCTACCTGCTGCTGCGCGGACGCTGCTCCGCGTGCCAGGCACCGATCGGCCGGCG
CTACCCGCTGGTGGAGCTGACCTGCGGCCTGGCCTCGGCGTTCGTGGCCTGGCATTTCGGCTTTGGCTGGCAGGCCGTCC
TGATGCTGCTGCTGAGCTGGGGCCTGTTGGCGATGAGCCTGATCGATGCCGATCATCAACTGTTGCCCGACGTGCTGGTG
CTGCCGCTGTTGTGGCTGGGCCTGATCGTCAATGGCTTCGAGCTGTTCGTCAGCCTCCACGATGCGCTGTGGGGCGCCGT
GGCCGGCTACCTGTGCCTGTGGTCGGTGTACTGGTCGTTCAAGCTGCTGACCGGCAAGGAAGGCATGGGGCACGGTGATT
TCAAGCTGTTGGCCATGTTCGGCGCCTGGGGCGGCTGGCAGATTCTGCCGATGACCCTGCTGCTGGCCTCACTGACGGGA
GCCCTGGCGGGGATCGCCCTGCTGCGCCGCAATCGTGCGCAAATGTCCACGCCTATCCCTTTCGGTCCCTTTCTGGCCAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCAGCTCCTATTTGCAGTTTGTCGGTTTCAGATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

• Type IV leader peptidase family (Peptidase_A24) (137-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	52.465	97.931	0.514
pilD	Vibrio campbellii strain DS40M4	52.297	97.586	0.51
pilD	Acinetobacter baumannii D1279779	50.545	94.828	0.479
pilD	Acinetobacter nosocomialis M2	49.818	94.828	0.472
pilD	Neisseria gonorrhoeae MS11	47.794	93.793	0.448