Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   JV59_RS15040 Genome accession   NZ_CP009264
Coordinates   3222755..3223870 (-) Length   371 a.a.
NCBI ID   WP_038514167.1    Uniprot ID   -
Organism   Vibrio coralliilyticus strain OCN014     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3217755..3228870
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JV59_RS15010 (JV59_39035) hemF 3218307..3219224 (-) 918 WP_021458651.1 oxygen-dependent coproporphyrinogen oxidase -
  JV59_RS15015 (JV59_39040) - 3219246..3219803 (-) 558 WP_038514161.1 L-threonylcarbamoyladenylate synthase -
  JV59_RS15020 (JV59_39045) purE 3220000..3220485 (+) 486 WP_006957519.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  JV59_RS15025 (JV59_39050) - 3220490..3221623 (+) 1134 WP_038514164.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  JV59_RS15030 (JV59_39055) - 3221673..3222257 (-) 585 WP_021458648.1 type I DNA topoisomerase -
  JV59_RS15035 (JV59_39060) - 3222273..3222752 (-) 480 WP_006957516.1 DUF494 family protein -
  JV59_RS15040 (JV59_39065) dprA 3222755..3223870 (-) 1116 WP_038514167.1 DNA-processing protein DprA Machinery gene
  JV59_RS15045 (JV59_39070) def 3224121..3224642 (+) 522 WP_038514170.1 peptide deformylase -
  JV59_RS15050 (JV59_39075) fmt 3224665..3225612 (+) 948 WP_038514172.1 methionyl-tRNA formyltransferase -
  JV59_RS15055 (JV59_39080) rsmB 3225669..3226949 (+) 1281 WP_038514175.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  JV59_RS15060 (JV59_39085) trkA 3226999..3228375 (+) 1377 WP_006957511.1 Trk system potassium transporter TrkA -

Sequence

Protein


Download         Length: 371 a.a.        Molecular weight: 40454.19 Da        Isoelectric Point: 6.2352

>NTDB_id=127870 JV59_RS15040 WP_038514167.1 3222755..3223870(-) (dprA) [Vibrio coralliilyticus strain OCN014]
MTKEELTAWLSLYFTPRIGPKTFQRLVAVDSPINIIDSSPETLRRLGFSDSQLDYLQHRAAEDIEACFEWQAESSARTIL
LLSDQRYPALLKQADAAPATLFVEGQLESLSRPQMAIVGSRNASIDGLNTARSFATQLVNQDMVVTSGLALGVDGYAHDG
ALNGNGQTIAVLGCGLNTVYPARHKKLAQRIVEQGALVSEFHPNVKPKADNFPRRNRIISGLSLGVLVIEAAEKSGSLIT
ARYAMEQGREVFAIPGSIHHPHARGCNLLIKQGACLVQQVSDITDEIDSLIRWSDVNKPPVQSDLFEQIDCKEELPFPQL
LANVGSKATPVDILASRTNIPVHEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1116 bp        

>NTDB_id=127870 JV59_RS15040 WP_038514167.1 3222755..3223870(-) (dprA) [Vibrio coralliilyticus strain OCN014]
ATGACGAAAGAAGAACTGACGGCTTGGCTGAGCTTGTACTTTACGCCGCGGATTGGACCCAAAACGTTTCAGCGTTTGGT
GGCGGTAGATTCTCCAATTAATATTATTGACTCTTCACCCGAGACATTACGCCGCTTAGGCTTTTCCGACTCGCAACTGG
ACTATCTCCAACACCGAGCTGCCGAGGATATTGAGGCGTGTTTCGAGTGGCAAGCAGAATCAAGTGCCAGAACCATTCTA
CTTTTGAGTGATCAGCGTTATCCGGCACTACTGAAACAGGCTGACGCTGCGCCAGCAACACTGTTTGTTGAAGGTCAGCT
AGAGAGCCTATCTCGGCCACAAATGGCTATCGTGGGCAGTCGTAATGCCAGTATTGATGGGCTTAACACTGCACGCAGCT
TTGCAACCCAGTTGGTGAATCAAGACATGGTTGTGACCAGCGGCTTGGCGCTAGGCGTTGATGGTTATGCCCATGATGGG
GCACTCAATGGCAATGGCCAAACCATCGCCGTGCTCGGTTGTGGCTTAAATACTGTGTATCCGGCACGGCATAAGAAGTT
AGCTCAACGAATCGTTGAACAAGGGGCGTTGGTGTCTGAGTTCCATCCTAATGTGAAGCCAAAAGCCGATAATTTTCCAC
GCCGAAATCGAATCATTAGTGGTTTGTCATTGGGCGTTTTAGTCATAGAAGCGGCAGAGAAAAGTGGCTCTCTGATCACC
GCTCGCTATGCGATGGAGCAAGGTCGCGAAGTGTTTGCGATTCCCGGCTCGATTCATCATCCCCACGCGAGAGGTTGTAA
CCTGTTGATAAAACAGGGTGCGTGTCTGGTTCAGCAGGTTTCTGACATCACCGATGAAATTGACAGTCTGATTCGCTGGT
CTGATGTTAATAAGCCGCCAGTGCAAAGCGATCTATTTGAACAAATTGATTGCAAAGAAGAATTGCCATTTCCTCAGCTG
TTAGCTAACGTAGGAAGTAAGGCTACACCAGTTGATATTCTTGCAAGCAGGACCAATATACCTGTGCATGAAGTCATGAT
GCAGCTCTTGGAGCTTGAGCTCTCAGGGCATGTTGTTGCGGTTTCCGGTGGCTATATTCGAAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(319-364)

DNA recombination-mediator protein A (DNA_processg_A)

(77-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

62.943

98.922

0.623
  dprA Vibrio cholerae strain A1552

57.951

100

0.58
  dprA Glaesserella parasuis strain SC1401

45.745

100

0.464
  dprA Legionella pneumophila strain ERS1305867

44.011

96.765

0.426
  dprA Neisseria meningitidis MC58

38.035

100

0.407
  dprA Neisseria meningitidis strain C311

38.035

100

0.407
  dprA Haemophilus influenzae Rd KW20

41.399

92.453

0.383
  dprA Acinetobacter baumannii D1279779

40.179

90.566

0.364
  dprA Acinetobacter baumannii strain A118

39.881

90.566

0.361

Multiple sequence alignment