Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | VV93_RS12555 | Genome accession | NZ_CP009261 |
| Coordinates | 2750519..2750986 (+) | Length | 155 a.a. |
| NCBI ID | WP_039554608.1 | Uniprot ID | - |
| Organism | Vibrio vulnificus strain 93U204 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2745519..2755986
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| VV93_RS12540 (VV93_v1c24860) | pdhR | 2747588..2748355 (-) | 768 | WP_011079554.1 | pyruvate dehydrogenase complex transcriptional repressor PdhR | - |
| VV93_RS12545 (VV93_v1c24870) | ampD | 2748744..2749316 (-) | 573 | WP_039554604.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| VV93_RS12550 (VV93_v1c24880) | nadC | 2749409..2750296 (+) | 888 | WP_039554606.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| VV93_RS12555 (VV93_v1c24890) | pilA | 2750519..2750986 (+) | 468 | WP_039554608.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | Machinery gene |
| VV93_RS12560 (VV93_v1c24900) | pilB | 2750990..2752678 (+) | 1689 | WP_039554610.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| VV93_RS12565 (VV93_v1c24910) | pilC | 2752727..2753953 (+) | 1227 | WP_039554612.1 | type II secretion system F family protein | Machinery gene |
| VV93_RS12570 (VV93_v1c24920) | pilD | 2754047..2754916 (+) | 870 | WP_039554614.1 | A24 family peptidase | Machinery gene |
| VV93_RS12575 (VV93_v1c24930) | coaE | 2754918..2755526 (+) | 609 | WP_039554617.1 | dephospho-CoA kinase | - |
Sequence
Protein
Download Length: 155 a.a. Molecular weight: 15982.35 Da Isoelectric Point: 5.1540
>NTDB_id=127811 VV93_RS12555 WP_039554608.1 2750519..2750986(+) (pilA) [Vibrio vulnificus strain 93U204]
MKKLNKTKKQQGFTLIELMIVVAIIGILAAFAVPAYQNYTKKATLAEFPKAAAAAKLAVELCAHENASNATTFETNCVSG
SNGVPSAFTLNKIEITVMTAADAGVSGGIAVVAEAADAKGPIAAGEQFIMAATYKAEGLEWASSCSADATDYCPN
MKKLNKTKKQQGFTLIELMIVVAIIGILAAFAVPAYQNYTKKATLAEFPKAAAAAKLAVELCAHENASNATTFETNCVSG
SNGVPSAFTLNKIEITVMTAADAGVSGGIAVVAEAADAKGPIAAGEQFIMAATYKAEGLEWASSCSADATDYCPN
Nucleotide
Download Length: 468 bp
>NTDB_id=127811 VV93_RS12555 WP_039554608.1 2750519..2750986(+) (pilA) [Vibrio vulnificus strain 93U204]
ATGAAGAAATTAAACAAAACCAAGAAACAACAAGGTTTTACCTTGATTGAATTAATGATAGTAGTGGCGATTATTGGTAT
TTTGGCCGCATTTGCAGTGCCTGCTTATCAAAATTATACAAAAAAAGCCACTTTAGCAGAGTTTCCAAAAGCAGCTGCAG
CAGCGAAACTAGCAGTTGAGTTGTGTGCGCATGAAAATGCATCAAATGCCACAACATTTGAAACAAACTGTGTATCAGGA
AGCAATGGAGTACCGTCAGCTTTTACACTGAACAAAATTGAAATTACCGTAATGACAGCCGCGGACGCTGGTGTTTCTGG
AGGCATAGCGGTTGTAGCTGAAGCAGCTGACGCAAAAGGCCCCATCGCCGCCGGCGAACAATTCATTATGGCTGCAACTT
ATAAAGCTGAAGGACTTGAGTGGGCCTCTTCGTGCTCAGCTGATGCTACCGATTATTGCCCAAACTAA
ATGAAGAAATTAAACAAAACCAAGAAACAACAAGGTTTTACCTTGATTGAATTAATGATAGTAGTGGCGATTATTGGTAT
TTTGGCCGCATTTGCAGTGCCTGCTTATCAAAATTATACAAAAAAAGCCACTTTAGCAGAGTTTCCAAAAGCAGCTGCAG
CAGCGAAACTAGCAGTTGAGTTGTGTGCGCATGAAAATGCATCAAATGCCACAACATTTGAAACAAACTGTGTATCAGGA
AGCAATGGAGTACCGTCAGCTTTTACACTGAACAAAATTGAAATTACCGTAATGACAGCCGCGGACGCTGGTGTTTCTGG
AGGCATAGCGGTTGTAGCTGAAGCAGCTGACGCAAAAGGCCCCATCGCCGCCGGCGAACAATTCATTATGGCTGCAACTT
ATAAAGCTGAAGGACTTGAGTGGGCCTCTTCGTGCTCAGCTGATGCTACCGATTATTGCCCAAACTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Vibrio campbellii strain DS40M4 |
57.051 |
100 |
0.574 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
42.568 |
95.484 |
0.406 |
| pilA2 | Legionella pneumophila str. Paris |
41.892 |
95.484 |
0.4 |
| pilA | Ralstonia pseudosolanacearum GMI1000 |
45.385 |
83.871 |
0.381 |
| pilA | Haemophilus influenzae 86-028NP |
40 |
93.548 |
0.374 |
| pilA | Glaesserella parasuis strain SC1401 |
37.908 |
98.71 |
0.374 |
| pilA | Haemophilus influenzae Rd KW20 |
40.876 |
88.387 |
0.361 |