Detailed information NTG0127814

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: VV93_RS12570
• Genome accession: NZ_CP009261
• Coordinates: 2754047..2754916 (+)
• Length: 289 a.a.
• NCBI ID: WP_039554614.1
• Uniprot ID: -
• Organism: Vibrio vulnificus strain 93U204
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2749047..2759916

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VV93_RS12550 (VV93_v1c24880)	nadC	2749409..2750296 (+)	888	WP_039554606.1	carboxylating nicotinate-nucleotide diphosphorylase	-
VV93_RS12555 (VV93_v1c24890)	pilA	2750519..2750986 (+)	468	WP_039554608.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	Machinery gene
VV93_RS12560 (VV93_v1c24900)	pilB	2750990..2752678 (+)	1689	WP_039554610.1	type IV-A pilus assembly ATPase PilB	Machinery gene
VV93_RS12565 (VV93_v1c24910)	pilC	2752727..2753953 (+)	1227	WP_039554612.1	type II secretion system F family protein	Machinery gene
VV93_RS12570 (VV93_v1c24920)	pilD	2754047..2754916 (+)	870	WP_039554614.1	A24 family peptidase	Machinery gene
VV93_RS12575 (VV93_v1c24930)	coaE	2754918..2755526 (+)	609	WP_039554617.1	dephospho-CoA kinase	-
VV93_RS12580 (VV93_v1c24940)	zapD	2755559..2756299 (+)	741	WP_011079546.1	cell division protein ZapD	-
VV93_RS12585 (VV93_v1c24950)	yacG	2756362..2756556 (+)	195	WP_011079545.1	DNA gyrase inhibitor YacG	-
VV93_RS12590 (VV93_v1c24960)	rplS	2756821..2757174 (-)	354	WP_011079544.1	50S ribosomal protein L19	-
VV93_RS12595 (VV93_v1c24970)	trmD	2757216..2757965 (-)	750	WP_039554619.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
VV93_RS12600 (VV93_v1c24980)	rimM	2757993..2758541 (-)	549	WP_039554622.1	ribosome maturation factor RimM	-
VV93_RS12605 (VV93_v1c24990)	rpsP	2758557..2758805 (-)	249	WP_011079541.1	30S ribosomal protein S16	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32246.23 Da
• Isoelectric Point: 6.4630

>NTDB_id=127814 VV93_RS12570 WP_039554614.1 2754047..2754916(+) (pilD) [Vibrio vulnificus strain 93U204]
MDALQYYPWLYIALASLFGLLVGSFLNVVIYRLPKIMELEWRQECAESFPEYNITPPTETLTLSTPRSSCPSCHTPIRVR
DNIPVFSWLALRGKCHHCQTKISARYPFVEALSAFLCGLVAWKFGYAPITVALIGFTLVLIAATFIDLDTMLLPDQLTLP
LTWAGIALALLEISPVSLQDSVNGAMAGYLCLWSVYHLFRLLTGKEGMGYGDFKLLAALGAWLGWQYLPMIILLSSVVGL
IFGLIQLRLQKQGIEMAFPFGPYLAIAGWVALMWGDSLMSWYLNYLIGA

Nucleotide

• Length: 870 bp

>NTDB_id=127814 VV93_RS12570 WP_039554614.1 2754047..2754916(+) (pilD) [Vibrio vulnificus strain 93U204]
ATGGACGCGTTACAATACTACCCTTGGCTTTATATTGCTTTAGCTTCCCTGTTTGGCTTACTGGTAGGCAGCTTTCTTAA
CGTCGTCATCTACCGTCTACCGAAAATAATGGAACTGGAATGGCGCCAAGAGTGTGCAGAGTCCTTTCCTGAATACAACA
TCACACCACCGACAGAAACCCTAACATTAAGCACGCCGCGCTCAAGTTGTCCTTCGTGCCACACCCCAATACGAGTTCGA
GATAATATTCCTGTCTTTAGTTGGTTAGCTCTAAGAGGAAAATGTCACCATTGCCAGACGAAAATCAGTGCTCGGTATCC
TTTTGTTGAAGCACTGAGCGCCTTTTTGTGCGGCCTCGTGGCTTGGAAGTTCGGTTATGCACCGATTACCGTAGCACTGA
TTGGTTTTACTTTGGTGTTGATCGCCGCCACCTTCATCGACTTAGATACCATGCTACTGCCTGATCAACTGACGCTGCCG
CTGACGTGGGCAGGCATCGCGCTAGCGTTACTAGAGATAAGCCCAGTATCTCTGCAAGATTCAGTGAACGGTGCGATGGC
AGGCTATCTCTGCCTTTGGAGCGTTTATCACCTTTTCCGATTGCTGACAGGGAAAGAAGGCATGGGTTACGGAGACTTTA
AATTGCTTGCGGCACTTGGAGCTTGGCTCGGCTGGCAATATCTACCGATGATCATCTTACTTTCTTCGGTTGTCGGGCTG
ATCTTTGGTCTCATTCAACTCAGATTGCAAAAGCAAGGCATTGAGATGGCTTTTCCATTTGGGCCTTATCTGGCCATTGC
TGGTTGGGTCGCCTTGATGTGGGGAGATAGCTTGATGTCTTGGTATCTCAACTATCTTATAGGGGCGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (137-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	76.817	100	0.768
pilD	Vibrio cholerae strain A1552	71.528	99.654	0.713
pilD	Acinetobacter nosocomialis M2	54.71	95.502	0.522
pilD	Acinetobacter baumannii D1279779	54.71	95.502	0.522
pilD	Neisseria gonorrhoeae MS11	47.653	95.848	0.457