Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   LM850658_RS06830 Genome accession   NZ_CP009242
Coordinates   1358579..1359823 (+) Length   414 a.a.
NCBI ID   WP_012581343.1    Uniprot ID   A0A0E0UWJ7
Organism   Listeria monocytogenes strain LM850658     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1353579..1364823
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LM850658_RS06805 (LM850658_06915) yfmH 1354036..1355322 (+) 1287 WP_012581345.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  LM850658_RS06810 (LM850658_06920) ymfI 1355415..1356146 (+) 732 WP_012581344.1 elongation factor P 5-aminopentanone reductase -
  LM850658_RS06815 (LM850658_06925) - 1356197..1357126 (+) 930 WP_003730599.1 RodZ family helix-turn-helix domain-containing protein -
  LM850658_RS06820 (LM850658_06930) pgsA 1357217..1357795 (+) 579 WP_003723921.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  LM850658_RS06825 (LM850658_06935) - 1357952..1358278 (-) 327 WP_041176513.1 hypothetical protein -
  LM850658_RS06830 (LM850658_06940) cinA 1358579..1359823 (+) 1245 WP_012581343.1 competence/damage-inducible protein A Machinery gene
  LM850658_RS06835 (LM850658_06945) recA 1360096..1361142 (+) 1047 WP_003725961.1 recombinase RecA Machinery gene
  LM850658_RS06840 (LM850658_06950) rny 1361443..1363005 (+) 1563 WP_003738907.1 ribonuclease Y -
  LM850658_RS06845 (LM850658_06955) - 1363119..1363616 (+) 498 WP_003736573.1 GNAT family N-acetyltransferase -
  LM850658_RS06850 (LM850658_06960) - 1363621..1364424 (+) 804 WP_012581342.1 TIGR00282 family metallophosphoesterase -
  LM850658_RS06855 (LM850658_06965) - 1364441..1364803 (+) 363 WP_003721907.1 RicAFT regulatory complex protein RicA family protein -

Sequence

Protein


Download         Length: 414 a.a.        Molecular weight: 45619.78 Da        Isoelectric Point: 4.6526

>NTDB_id=127575 LM850658_RS06830 WP_012581343.1 1358579..1359823(+) (cinA) [Listeria monocytogenes strain LM850658]
MASAEIIAVGTELLLGQIVNSNAAFISQELAADGIYVYHHTVVGDNPARLKEVIEIAENRSDILIFTGGLGPTEDDITKQ
ILAAHLQKQLVEDEYHMNKINEYFTSRNRAMTENNKLQAVIIEDSIVLNNDFGFAAGMYLRENNHTYVLLPGPPSEMKPM
FTSYANPLLLSESGDQNILESKIMRFFGIGESQLAADLNDLIVTQVNPTIATYAGDNEVVVRITATAKTKEEASRLVKDT
EEEILRRDGTFLYGYGEVSLSELVTAMLLEKELTISAAESFTAGLFQAEIARFPGISKIFKGGMVTYSEETKQSILQVSP
QVIKEKGVVSAECAKEMAENVSRLCKTDIGISFTGVAGPDSLEGHPAGTIWIGLSVKGYETEAFQFVYGRDRNHNRRRAV
KQGFQLIKQFLDAN

Nucleotide


Download         Length: 1245 bp        

>NTDB_id=127575 LM850658_RS06830 WP_012581343.1 1358579..1359823(+) (cinA) [Listeria monocytogenes strain LM850658]
ATGGCAAGTGCGGAAATCATTGCTGTAGGAACAGAACTATTACTTGGACAAATTGTTAATTCTAATGCTGCGTTTATTTC
ACAAGAATTAGCTGCAGACGGAATATATGTATATCATCACACGGTAGTTGGAGATAATCCGGCGCGTTTAAAAGAAGTAA
TTGAAATCGCTGAAAACCGAAGTGACATTTTAATCTTTACCGGCGGACTTGGACCGACTGAGGATGATATTACAAAACAA
ATCTTAGCTGCTCATCTACAAAAGCAATTAGTGGAAGATGAATACCATATGAATAAAATTAATGAGTATTTCACTTCTAG
GAATAGGGCTATGACCGAAAATAATAAATTACAAGCGGTTATTATTGAAGATTCCATCGTATTAAATAATGATTTTGGCT
TTGCGGCTGGAATGTACTTAAGAGAAAACAATCATACTTACGTTTTACTACCAGGTCCACCATCTGAAATGAAACCAATG
TTTACAAGCTATGCTAACCCATTACTTTTAAGCGAAAGTGGCGATCAAAACATTTTAGAATCCAAAATTATGCGCTTTTT
CGGTATTGGAGAATCACAATTAGCTGCGGATTTAAATGATTTGATTGTCACACAAGTCAACCCGACGATTGCGACCTATG
CTGGTGATAATGAAGTCGTGGTTCGCATCACAGCGACAGCTAAAACAAAAGAAGAAGCAAGCAGACTTGTGAAGGATACC
GAAGAAGAAATATTGCGCCGAGATGGTACCTTTTTATATGGATATGGAGAGGTGTCATTGTCTGAATTAGTTACGGCGAT
GTTACTTGAAAAAGAACTTACCATCTCTGCTGCAGAAAGTTTCACTGCTGGTTTGTTCCAAGCAGAAATTGCCCGCTTTC
CTGGCATTTCGAAAATTTTCAAGGGTGGTATGGTGACATACAGTGAAGAAACAAAACAATCTATATTACAAGTATCTCCC
CAAGTAATAAAAGAAAAAGGCGTTGTTAGTGCGGAATGTGCAAAGGAAATGGCTGAAAATGTAAGCCGCCTTTGTAAGAC
GGATATTGGAATCAGTTTTACAGGTGTTGCAGGCCCAGATAGTTTAGAAGGTCATCCTGCTGGTACTATTTGGATTGGGT
TAAGCGTTAAAGGTTATGAAACAGAGGCTTTTCAGTTTGTTTATGGAAGAGATCGAAACCATAATCGCCGCCGTGCAGTA
AAACAAGGATTTCAGTTAATTAAACAATTTTTAGACGCGAATTAG

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(259-410)

Damage-inducible protein CinA KH domain (CinA_KH)

(181-254)

Probable molybdopterin binding domain (MoCF_biosynth)

(6-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0E0UWJ7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

51.1

98.792

0.505
  cinA Streptococcus pneumoniae TIGR4

49.286

100

0.5
  cinA Streptococcus mitis SK321

49.165

100

0.498
  cinA Streptococcus mitis NCTC 12261

48.926

100

0.495
  cinA Streptococcus pneumoniae Rx1

48.571

100

0.493
  cinA Streptococcus pneumoniae R6

48.571

100

0.493
  cinA Streptococcus pneumoniae D39

48.333

100

0.49
  cinA Streptococcus mutans UA159

48.544

99.517

0.483
  cinA Streptococcus suis isolate S10

38.835

99.517

0.386

Multiple sequence alignment