Detailed information NTG0126837

Bioinformatically predicted

Overview

• Name: comFC
• Type: Machinery gene
• Locus tag: ID12_RS02220
• Genome accession: NZ_CP009108
• Coordinates: 436880..437461 (-)
• Length: 193 a.a.
• NCBI ID: WP_234717161.1
• Uniprot ID: -
• Organism: Bacillus altitudinis strain GR-8
• Function: ssDNA transport into the cell (predicted from homology) DNA binding and uptake

Genomic Context

Location: 431880..442461

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ID12_RS02185 (ID12_02260)	fliW	432016..432450 (-)	435	WP_007499985.1	flagellar assembly protein FliW	-
ID12_RS02190 (ID12_02265)	-	432479..433057 (-)	579	WP_035701576.1	DUF6470 family protein	-
ID12_RS02195 (ID12_02270)	flgL	433104..434015 (-)	912	WP_017368141.1	flagellar hook-associated protein FlgL	-
ID12_RS02200 (ID12_02275)	flgK	434024..435544 (-)	1521	WP_017368142.1	flagellar hook-associated protein FlgK	-
ID12_RS02205 (ID12_02280)	-	435560..436042 (-)	483	WP_007499977.1	flagellar protein FlgN	-
ID12_RS02210 (ID12_02285)	flgM	436061..436324 (-)	264	WP_003213252.1	flagellar biosynthesis anti-sigma factor FlgM	-
ID12_RS02215 (ID12_02290)	-	436404..436823 (-)	420	WP_017357864.1	TIGR03826 family flagellar region protein	-
ID12_RS02220 (ID12_02295)	comFC	436880..437461 (-)	582	WP_234717161.1	ComF family protein	Machinery gene
ID12_RS02225 (ID12_02300)	-	437563..437856 (-)	294	WP_035701582.1	late competence development ComFB family protein	-
ID12_RS02230 (ID12_02305)	comFA	437921..439300 (-)	1380	WP_142675479.1	DEAD/DEAH box helicase	Machinery gene
ID12_RS02235 (ID12_02310)	-	439420..440262 (-)	843	WP_024719242.1	DegV family protein	-
ID12_RS02240 (ID12_02315)	degU	440464..441153 (-)	690	WP_008348273.1	two-component system response regulator DegU	Regulator
ID12_RS02245 (ID12_02320)	degS	441218..442393 (-)	1176	WP_024719243.1	sensor histidine kinase	Regulator

Sequence

Protein

• Length: 193 a.a.
• Molecular weight: 22019.79 Da
• Isoelectric Point: 10.6818

>NTDB_id=126837 ID12_RS02220 WP_234717161.1 436880..437461(-) (comFC) [Bacillus altitudinis strain GR-8]
MKIQGPTCPKCGRAQLNDQLCQDCSRWNKRRDFAEILVMNRSVYAYNDFMKDILARFKFRGDTALADLFKKDVQSAFKRS
FSIKEPVLVPIPLSKERLKERGFNQSMMLASMIGGPILEPLIKVHQSKQSKKRKNERLHQQNLFQLRQSNPIVLKDVVLI
DDIYTTGATVYHAAKILKGAGAKSVSSFTLIRS

Nucleotide

• Length: 582 bp

>NTDB_id=126837 ID12_RS02220 WP_234717161.1 436880..437461(-) (comFC) [Bacillus altitudinis strain GR-8]
ATGAAGATTCAAGGTCCTACTTGTCCCAAATGCGGAAGAGCGCAATTAAATGATCAATTGTGTCAGGATTGTTCAAGGTG
GAATAAACGACGGGATTTTGCTGAGATTCTTGTGATGAATCGATCTGTTTATGCTTACAACGACTTTATGAAAGATATTC
TAGCTCGATTTAAATTTCGAGGTGATACGGCTTTAGCTGATCTATTTAAAAAAGATGTACAGTCAGCGTTTAAACGTTCT
TTTTCAATCAAAGAACCGGTCCTTGTCCCAATTCCTTTGAGTAAAGAGAGATTAAAGGAAAGAGGATTCAATCAGTCAAT
GATGCTTGCTTCCATGATTGGCGGACCTATATTGGAGCCACTTATAAAAGTACATCAAAGTAAGCAGTCTAAGAAAAGAA
AAAATGAACGTTTACATCAACAGAATTTGTTCCAATTAAGGCAGTCAAACCCGATCGTTCTAAAGGATGTCGTGTTAATC
GATGACATTTATACAACTGGGGCGACAGTCTATCATGCAGCAAAAATTTTAAAAGGAGCAGGCGCCAAAAGTGTTTCCTC
TTTTACGTTGATTCGTAGTTAA

Domains

Predicted by InterproScan.

• Phosphoribosyl transferase domain (Pribosyltran) (126-191)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comFC	Bacillus subtilis subsp. subtilis str. 168	50.777	100	0.508
comFC/cflB	Streptococcus mitis SK321	39.267	98.964	0.389
comFC/cflB	Streptococcus mitis NCTC 12261	38.743	98.964	0.383
comFC/cflB	Streptococcus pneumoniae R6	38.22	98.964	0.378
comFC/cflB	Streptococcus pneumoniae TIGR4	38.22	98.964	0.378
comFC/cflB	Streptococcus pneumoniae Rx1	38.22	98.964	0.378
comFC/cflB	Streptococcus pneumoniae D39	38.22	98.964	0.378