Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   ID12_RS02230 Genome accession   NZ_CP009108
Coordinates   437921..439300 (-) Length   459 a.a.
NCBI ID   WP_142675479.1    Uniprot ID   -
Organism   Bacillus altitudinis strain GR-8     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 432921..444300
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ID12_RS02195 (ID12_02270) flgL 433104..434015 (-) 912 WP_017368141.1 flagellar hook-associated protein FlgL -
  ID12_RS02200 (ID12_02275) flgK 434024..435544 (-) 1521 WP_017368142.1 flagellar hook-associated protein FlgK -
  ID12_RS02205 (ID12_02280) - 435560..436042 (-) 483 WP_007499977.1 flagellar protein FlgN -
  ID12_RS02210 (ID12_02285) flgM 436061..436324 (-) 264 WP_003213252.1 flagellar biosynthesis anti-sigma factor FlgM -
  ID12_RS02215 (ID12_02290) - 436404..436823 (-) 420 WP_017357864.1 TIGR03826 family flagellar region protein -
  ID12_RS02220 (ID12_02295) comFC 436880..437461 (-) 582 WP_234717161.1 ComF family protein Machinery gene
  ID12_RS02225 (ID12_02300) - 437563..437856 (-) 294 WP_035701582.1 late competence development ComFB family protein -
  ID12_RS02230 (ID12_02305) comFA 437921..439300 (-) 1380 WP_142675479.1 DEAD/DEAH box helicase Machinery gene
  ID12_RS02235 (ID12_02310) - 439420..440262 (-) 843 WP_024719242.1 DegV family protein -
  ID12_RS02240 (ID12_02315) degU 440464..441153 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  ID12_RS02245 (ID12_02320) degS 441218..442393 (-) 1176 WP_024719243.1 sensor histidine kinase Regulator
  ID12_RS02250 (ID12_02325) - 442615..443283 (+) 669 WP_050826655.1 YigZ family protein -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 52476.21 Da        Isoelectric Point: 9.9106

>NTDB_id=126838 ID12_RS02230 WP_142675479.1 437921..439300(-) (comFA) [Bacillus altitudinis strain GR-8]
MNLEKAMELSHKLQSRHLLPIECQCTQSELEWLENQGFIHRTPAVNRVASGLICCRCGVSNKRYFALSPCETCKKDCVYC
RSCIMLGKVSECGFLYEWTGPQKKETRQVELTWQGELSKGQKRASDRLVEAIQNKFDLLVWAVCGAGKTEVLFHGIKYAL
NNGMSVCIATPRTDVVLELEPRMRKAFQGLNIAALYGGSSQRFQMAPLMIATTHQLMRYKNAFDVLIVDEVDAFPYSMDE
RLQFAVLKSMKKTGVRIYLSATPSKKMQKDVACRQLEAIKIPLRFHQKPLPVPTFQWVGDWKKKLKRNRLPASTMNWLHE
HITKKKRVLLFVPSISTMKKVTHILQVQCVNVQGVSADDQERKQKVQHFRDHRYDVLVTTTILERGVTIQDVQVGVLGAE
SPIFTESALVQISGRAGRHPDFFNGDVYFFHFGLTRSMKQAKKHIVKMNNTAEKEFSEK

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=126838 ID12_RS02230 WP_142675479.1 437921..439300(-) (comFA) [Bacillus altitudinis strain GR-8]
TTGAATCTGGAAAAAGCAATGGAACTCAGTCACAAGCTACAATCAAGGCATCTTCTTCCTATTGAATGTCAATGTACACA
GTCCGAATTGGAGTGGCTGGAGAATCAAGGATTCATCCATAGAACACCTGCTGTCAATAGGGTGGCGAGTGGTTTGATCT
GCTGCCGGTGCGGTGTATCAAACAAGCGCTACTTTGCCCTCTCTCCGTGTGAAACATGTAAAAAAGACTGTGTATACTGT
AGATCCTGCATCATGCTGGGAAAAGTAAGTGAATGTGGCTTTCTCTATGAATGGACGGGTCCACAAAAGAAAGAAACAAG
ACAAGTTGAATTAACATGGCAGGGAGAACTTTCTAAAGGGCAAAAGAGAGCGTCCGATAGGCTAGTAGAAGCAATCCAAA
ACAAATTTGATCTGCTCGTTTGGGCTGTTTGTGGTGCGGGGAAAACGGAGGTGCTTTTTCACGGAATAAAATATGCGCTA
AATAACGGAATGAGTGTTTGTATTGCGACGCCTAGAACCGATGTTGTACTTGAGCTTGAACCTCGAATGAGAAAGGCATT
TCAAGGACTGAATATAGCTGCACTTTATGGCGGGAGTTCTCAAAGATTTCAAATGGCACCGCTTATGATCGCTACAACCC
ATCAGCTAATGAGATATAAAAACGCTTTTGATGTCCTCATTGTAGACGAAGTCGATGCTTTTCCTTATTCAATGGATGAA
CGGCTTCAGTTTGCTGTTTTAAAGTCAATGAAAAAAACAGGAGTTAGAATTTACTTAAGTGCCACACCATCTAAAAAAAT
GCAAAAGGATGTTGCTTGTAGACAATTAGAAGCGATCAAAATTCCTCTGCGCTTCCACCAAAAACCGCTGCCTGTCCCAA
CATTTCAATGGGTTGGAGATTGGAAAAAGAAATTAAAAAGAAATCGGCTTCCAGCATCTACAATGAACTGGCTGCATGAA
CATATCACAAAGAAAAAAAGAGTGCTACTCTTTGTTCCTTCTATTTCTACTATGAAGAAGGTAACTCATATTCTTCAAGT
TCAATGTGTAAATGTACAGGGAGTTTCTGCCGATGATCAAGAAAGGAAGCAAAAAGTCCAGCATTTCAGAGATCATAGAT
ACGATGTATTGGTTACAACAACTATTCTAGAAAGAGGCGTTACCATTCAAGATGTTCAAGTGGGCGTATTAGGTGCGGAA
TCTCCTATTTTTACAGAAAGTGCACTTGTCCAAATTTCTGGTAGAGCAGGGAGACATCCAGATTTTTTTAATGGAGACGT
GTACTTTTTTCATTTTGGTTTAACGAGAAGTATGAAACAAGCAAAGAAACATATCGTAAAAATGAATAATACAGCTGAAA
AAGAGTTTTCTGAAAAATAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(320-419)

Type III restriction enzyme, res subunit (ResIII)

(116-264)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

52.125

97.386

0.508

Multiple sequence alignment