Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   ID12_RS02240 Genome accession   NZ_CP009108
Coordinates   440464..441153 (-) Length   229 a.a.
NCBI ID   WP_008348273.1    Uniprot ID   A0A5K1NCW2
Organism   Bacillus altitudinis strain GR-8     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 435464..446153
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ID12_RS02205 (ID12_02280) - 435560..436042 (-) 483 WP_007499977.1 flagellar protein FlgN -
  ID12_RS02210 (ID12_02285) flgM 436061..436324 (-) 264 WP_003213252.1 flagellar biosynthesis anti-sigma factor FlgM -
  ID12_RS02215 (ID12_02290) - 436404..436823 (-) 420 WP_017357864.1 TIGR03826 family flagellar region protein -
  ID12_RS02220 (ID12_02295) comFC 436880..437461 (-) 582 WP_234717161.1 ComF family protein Machinery gene
  ID12_RS02225 (ID12_02300) - 437563..437856 (-) 294 WP_035701582.1 late competence development ComFB family protein -
  ID12_RS02230 (ID12_02305) comFA 437921..439300 (-) 1380 WP_142675479.1 DEAD/DEAH box helicase Machinery gene
  ID12_RS02235 (ID12_02310) - 439420..440262 (-) 843 WP_024719242.1 DegV family protein -
  ID12_RS02240 (ID12_02315) degU 440464..441153 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  ID12_RS02245 (ID12_02320) degS 441218..442393 (-) 1176 WP_024719243.1 sensor histidine kinase Regulator
  ID12_RS02250 (ID12_02325) - 442615..443283 (+) 669 WP_050826655.1 YigZ family protein -
  ID12_RS02255 (ID12_02330) - 443268..444365 (+) 1098 WP_007499958.1 LCP family protein -
  ID12_RS02260 (ID12_02335) - 444403..445470 (-) 1068 WP_007499956.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25852.54 Da        Isoelectric Point: 5.9436

>NTDB_id=126839 ID12_RS02240 WP_008348273.1 440464..441153(-) (degU) [Bacillus altitudinis strain GR-8]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVADGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=126839 ID12_RS02240 WP_008348273.1 440464..441153(-) (degU) [Bacillus altitudinis strain GR-8]
GTGACTAAAGTAAATATTGTAATTATCGATGACCACCAATTATTCCGTGAAGGTGTCAAACGGATTTTAGATTTTGAACC
TACTTTTGAAGTAGTTGCAGAAGGAGACGACGGTGACGAAGCTGCACGTATCGTAGAACACTATCATCCGGATGTTGTCA
TTATGGACATTAATATGCCGAATGTAAATGGTGTGGAGGCTACAAAACAGCTAGTAGAGCTTTATCCCGAATCAAAAGTC
ATTATCCTATCTATTCATGACGATGAAAACTATGTGACACATGCATTAAAAACAGGAGCAAGAGGCTACTTGTTAAAAGA
AATGGATGCAGATACCCTCATTGAAGCAGTAAAAGTAGTAGCTGACGGAGGCTCTTATTTACATCCGAAAGTCACTCATA
ACTTAGTAAATGAATTCCGACGCTTAGCAACAAGCGGCGTTTCAGCACATCCACAGCATGAGGTATATCCTGAAATTCGC
AGACCACTTCATATCTTAACAAGACGTGAATGTGAAGTTCTTCAAATGTTAGCTGACGGAAAGAGCAACAGAGGTATTGG
TGAGTCGCTCTTTATTAGTGAGAAAACAGTCAAAAACCACGTGAGTAACATCTTGCAAAAAATGAATGTAAACGACCGTA
CTCAAGCTGTTGTTGTAGCAATTAAAAACGGCTGGGTAGAAATGAGATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1NCW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996

Multiple sequence alignment