Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   NCDO2118_RS06455 Genome accession   NZ_CP009054
Coordinates   1332323..1333171 (+) Length   282 a.a.
NCBI ID   WP_012897825.1    Uniprot ID   A0A2A9I6Y4
Organism   Lactococcus lactis subsp. lactis NCDO 2118     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1327323..1338171
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NCDO2118_RS06430 (NCDO2118_1235) ilvN 1328083..1328559 (+) 477 WP_012897821.1 acetolactate synthase small subunit -
  NCDO2118_RS06435 (NCDO2118_1236) ilvC 1328605..1329627 (+) 1023 WP_012897822.1 ketol-acid reductoisomerase -
  NCDO2118_RS06440 (NCDO2118_1237) ilvA 1329683..1330930 (+) 1248 WP_038603412.1 threonine ammonia-lyase IlvA -
  NCDO2118_RS06445 (NCDO2118_1238) budA 1331046..1331756 (+) 711 WP_003131140.1 acetolactate decarboxylase -
  NCDO2118_RS06450 (NCDO2118_1239) - 1331797..1332177 (+) 381 WP_012897824.1 RidA family protein -
  NCDO2118_RS06455 (NCDO2118_1240) dprA 1332323..1333171 (+) 849 WP_012897825.1 DNA-processing protein DprA Machinery gene
  NCDO2118_RS06460 (NCDO2118_1241) topA 1333433..1335565 (+) 2133 WP_012897826.1 type I DNA topoisomerase -
  NCDO2118_RS06465 (NCDO2118_1242) trmFO 1335637..1336980 (+) 1344 WP_012897827.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  NCDO2118_RS06470 (NCDO2118_1243) xerS 1337024..1338094 (-) 1071 WP_003131037.1 tyrosine recombinase XerS -

Sequence

Protein


Download         Length: 282 a.a.        Molecular weight: 32119.17 Da        Isoelectric Point: 9.5086

>NTDB_id=126428 NCDO2118_RS06455 WP_012897825.1 1332323..1333171(+) (dprA) [Lactococcus lactis subsp. lactis NCDO 2118]
MITNFDLYRWKKAGMTNLGVNKLLKFFHRYDKKISLRQMGQVAQLKSIPNFIEQYKNQDVSKLREEYKIYPSFSLLDEIY
PERLKEIYNPPVLLFYQGDIRLLKTPKLAFVGSRQASSQGIKAVQKIVTELNQNFTIVSGLAKGIDTASHLSAIKNKIPT
IAVIGTGLDIFYPLENRKIQEYLAKNQLILSEYSVGEKPLRYHFPERNRIIAGLSHGVVVIEAKLRSGSLITCERALEEG
RDIFAVPGNIADGFSDGCNHLIQQGAKLIYQAQDILEEYLYD

Nucleotide


Download         Length: 849 bp        

>NTDB_id=126428 NCDO2118_RS06455 WP_012897825.1 1332323..1333171(+) (dprA) [Lactococcus lactis subsp. lactis NCDO 2118]
ATGATAACAAATTTTGATTTATATCGTTGGAAAAAAGCTGGCATGACCAATTTAGGAGTAAATAAACTTTTAAAATTTTT
TCATAGATATGATAAAAAAATAAGTTTAAGACAAATGGGACAAGTAGCACAACTTAAATCAATTCCCAACTTTATTGAAC
AATATAAAAATCAAGACGTAAGTAAACTGAGAGAAGAGTATAAAATATACCCATCATTTTCTCTTCTTGATGAAATTTAT
CCCGAAAGGCTCAAGGAAATTTACAATCCACCGGTTCTATTATTTTATCAAGGAGATATAAGACTCTTAAAAACTCCTAA
ATTAGCTTTTGTTGGTAGTCGACAAGCAAGCTCACAAGGAATTAAAGCCGTTCAAAAAATTGTGACAGAGTTGAACCAAA
ATTTTACGATTGTCAGCGGACTCGCTAAAGGAATTGATACAGCAAGTCATCTTTCTGCCATTAAAAATAAAATCCCTACA
ATTGCAGTTATCGGTACAGGCTTAGATATCTTTTATCCTTTAGAAAATCGAAAAATTCAAGAGTATCTTGCTAAAAACCA
ACTCATACTATCAGAATATTCAGTCGGAGAAAAGCCACTTCGTTATCATTTTCCTGAACGTAATCGTATCATTGCGGGAC
TTTCACATGGTGTAGTAGTGATAGAAGCAAAGTTACGAAGTGGTAGTTTAATTACTTGTGAGCGCGCTCTGGAAGAAGGA
AGAGATATTTTCGCTGTACCAGGAAACATAGCAGATGGATTTTCAGATGGCTGTAATCATCTAATACAACAAGGAGCAAA
ATTAATCTATCAAGCCCAAGATATCTTAGAAGAATATTTGTATGATTAA

Domains

Predicted by InterproScan.

DNA processing protein A sterile alpha motif domain (SAM_DprA)

(2-63)

DNA recombination-mediator protein A (DNA_processg_A)

(76-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2A9I6Y4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Lactococcus lactis subsp. cremoris KW2

86.879

100

0.869
  dprA Streptococcus mutans UA159

60.072

98.582

0.592
  dprA/cilB/dalA Streptococcus mitis SK321

54.643

99.291

0.543
  dprA/cilB/dalA Streptococcus pneumoniae R6

53.929

99.291

0.535
  dprA/cilB/dalA Streptococcus mitis NCTC 12261

53.929

99.291

0.535
  dprA/cilB/dalA Streptococcus pneumoniae TIGR4

53.929

99.291

0.535
  dprA/cilB/dalA Streptococcus pneumoniae Rx1

53.929

99.291

0.535
  dprA/cilB/dalA Streptococcus pneumoniae D39

53.929

99.291

0.535
  dprA Legionella pneumophila strain ERS1305867

39.13

97.872

0.383
  dprA Haemophilus influenzae Rd KW20

38.889

95.745

0.372
  dprA Bacillus subtilis subsp. subtilis str. 168

43.777

82.624

0.362
  dprA Latilactobacillus sakei subsp. sakei 23K

40

90.426

0.362

Multiple sequence alignment