Detailed information NTG0126232

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: AMD06_RS05690
• Genome accession: NZ_CP009040
• Coordinates: 1248246..1249502 (-)
• Length: 418 a.a.
• NCBI ID: WP_040107659.1
• Uniprot ID: A0AAI7ZHE3
• Organism: Xanthomonas citri pv. citri strain AW16
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1243246..1254502

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AMD06_RS05680 (J168_01136)	coaE	1246754..1247362 (-)	609	WP_011052129.1	dephospho-CoA kinase	-
AMD06_RS05685 (J168_01137)	-	1247376..1248239 (-)	864	WP_003491180.1	A24 family peptidase	-
AMD06_RS05690 (J168_01138)	pilC	1248246..1249502 (-)	1257	WP_040107659.1	type II secretion system F family protein	Machinery gene
AMD06_RS05695 (J168_01139)	-	1249859..1250299 (+)	441	WP_015471735.1	pilin	-
AMD06_RS05700 (J168_01140)	-	1250409..1250864 (+)	456	WP_015463526.1	pilin	-
AMD06_RS05705 (J168_01141)	pilB	1250928..1252664 (+)	1737	WP_041471193.1	type IV-A pilus assembly ATPase PilB	Machinery gene
AMD06_RS05710 (J168_01142)	pilB	1253158..1253277 (+)	120	WP_005915819.1	hypothetical protein	Machinery gene

Sequence

Protein

• Length: 418 a.a.
• Molecular weight: 45374.73 Da
• Isoelectric Point: 10.2788

>NTDB_id=126232 AMD06_RS05690 WP_040107659.1 1248246..1249502(-) (pilC) [Xanthomonas citri pv. citri strain AW16]
MSAARSVVKTKTAASAEQMSPFVWEGTDKRGVKMKGEQTARNANLLRAELRRQGITPLVVKVKPKPLFGAAGKKVSAKDI
SFFSRQMATMMKSGVPIVGALEIIGSGQKNPRMRTMVGQIRTDIEGGASLYEAVSKHPVQFDELYRNLVKAGEGAGVLET
VLDTVATYKENLEALKGKIKKALFYPAMVMAVAMLVSAILLVWVVPQFEDVFKGFGAELPAFTQMIVNLSRFMVSWWWLM
LFALVGAAIGSVFAYKRSPAMQHGMDRLVLKVPIIGQIMHNSSIARFARTTAVTFKAGVPLVEALGIVAGATGNSVYEKA
VLRMREDVSVGYPVNVAMKQVNLFPHMVVQMTAIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLIEPLIMVFIGTIVG
GMVIGMYLPIFKLASVVG

Nucleotide

• Length: 1257 bp

>NTDB_id=126232 AMD06_RS05690 WP_040107659.1 1248246..1249502(-) (pilC) [Xanthomonas citri pv. citri strain AW16]
ATGTCAGCAGCACGTAGCGTAGTCAAGACGAAGACCGCCGCATCGGCGGAGCAGATGAGTCCGTTTGTCTGGGAGGGGAC
AGACAAGCGCGGCGTCAAGATGAAAGGCGAACAAACGGCCCGCAATGCAAATCTGCTGCGCGCCGAGTTACGGCGCCAGG
GCATTACTCCTCTCGTCGTGAAAGTTAAGCCGAAACCACTATTCGGCGCTGCCGGAAAGAAAGTTTCCGCAAAAGACATT
TCATTTTTCAGCCGACAGATGGCAACCATGATGAAGTCCGGCGTGCCGATTGTCGGCGCGCTGGAGATCATTGGCAGCGG
CCAAAAGAATCCGCGCATGCGCACAATGGTCGGACAGATTAGGACAGATATCGAAGGGGGGGCATCGCTCTACGAAGCCG
TAAGCAAGCACCCGGTGCAATTTGATGAGCTCTATCGGAATTTGGTCAAGGCAGGCGAAGGCGCAGGGGTACTGGAAACT
GTGCTCGACACCGTCGCCACTTACAAAGAAAACCTTGAAGCCCTGAAAGGCAAGATCAAGAAGGCACTGTTCTACCCTGC
CATGGTAATGGCAGTGGCGATGTTGGTCAGTGCAATCCTGCTTGTTTGGGTGGTTCCCCAATTTGAAGATGTCTTCAAGG
GCTTTGGAGCGGAGCTGCCTGCGTTCACACAGATGATCGTCAACCTGTCTCGCTTTATGGTGTCTTGGTGGTGGCTGATG
CTGTTCGCACTTGTTGGCGCTGCGATTGGGTCTGTTTTCGCATACAAGCGTTCACCAGCAATGCAACATGGCATGGACCG
CCTGGTGCTAAAAGTGCCGATCATTGGTCAGATCATGCACAACAGCTCAATTGCAAGATTCGCCCGGACGACGGCGGTGA
CCTTCAAGGCCGGCGTACCGCTAGTCGAGGCGCTGGGCATCGTGGCCGGTGCTACAGGTAATTCGGTCTACGAAAAAGCA
GTACTGCGCATGCGCGAAGACGTCTCCGTGGGCTACCCGGTCAACGTCGCGATGAAACAGGTCAACCTGTTTCCGCATAT
GGTGGTGCAGATGACCGCCATCGGTGAAGAAGCGGGCGCGCTGGATGCCATGCTGTTCAAGGTAGCGGAGTATTTCGAGC
AGGAAGTCAACAACGCGGTCGATGCGCTCAGCAGCCTGATCGAACCCCTGATCATGGTGTTCATTGGTACCATCGTCGGC
GGCATGGTCATCGGCATGTACCTGCCTATCTTCAAGCTCGCCTCGGTGGTTGGATAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (287-409)

• Type II secretion system (T2SS), protein F (T2SSF) (83-206)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Pseudomonas stutzeri DSM 10701	53.086	96.89	0.514
pilC	Acinetobacter baylyi ADP1	51.843	97.368	0.505
pilC	Acinetobacter baumannii D1279779	51.613	96.411	0.498
pilC	Legionella pneumophila strain ERS1305867	52.525	94.737	0.498
pilG	Neisseria meningitidis 44/76-A	42.963	96.89	0.416
pilG	Neisseria gonorrhoeae MS11	42.822	96.651	0.414
pilC	Vibrio cholerae strain A1552	41.814	94.976	0.397
pilC	Vibrio campbellii strain DS40M4	39.95	96.411	0.385