Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilB   Type   Machinery gene
Locus tag   AMD06_RS05710 Genome accession   NZ_CP009040
Coordinates   1253158..1253277 (+) Length   39 a.a.
NCBI ID   WP_005915819.1    Uniprot ID   A0A7S6YV99
Organism   Xanthomonas citri pv. citri strain AW16     
Function   power the assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1248158..1258277
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AMD06_RS05690 (J168_01138) pilC 1248246..1249502 (-) 1257 WP_040107659.1 type II secretion system F family protein Machinery gene
  AMD06_RS05695 (J168_01139) - 1249859..1250299 (+) 441 WP_015471735.1 pilin -
  AMD06_RS05700 (J168_01140) - 1250409..1250864 (+) 456 WP_015463526.1 pilin -
  AMD06_RS05705 (J168_01141) pilB 1250928..1252664 (+) 1737 WP_041471193.1 type IV-A pilus assembly ATPase PilB Machinery gene
  AMD06_RS05710 (J168_01142) pilB 1253158..1253277 (+) 120 WP_005915819.1 hypothetical protein Machinery gene
  AMD06_RS05715 (J168_01144) pilR 1253799..1255193 (-) 1395 WP_005930970.1 sigma-54 dependent transcriptional regulator Regulator
  AMD06_RS05720 (J168_01145) - 1255518..1257131 (-) 1614 WP_003488599.1 HAMP domain-containing sensor histidine kinase -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4178.84 Da        Isoelectric Point: 9.0113

>NTDB_id=126234 AMD06_RS05710 WP_005915819.1 1253158..1253277(+) (pilB) [Xanthomonas citri pv. citri strain AW16]
MQIAEAAQAIGIRDLRQSALMKAAHGVTSLAEINRVTKD

Nucleotide


Download         Length: 120 bp        

>NTDB_id=126234 AMD06_RS05710 WP_005915819.1 1253158..1253277(+) (pilB) [Xanthomonas citri pv. citri strain AW16]
ATGCAGATCGCCGAGGCCGCACAGGCGATCGGTATCCGCGATTTGCGGCAGTCGGCGTTGATGAAGGCTGCGCACGGGGT
GACCAGCCTGGCGGAGATCAATCGTGTGACGAAGGACTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7S6YV99

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilB Acinetobacter baylyi ADP1

51.282

100

0.513
  pilB Acinetobacter baumannii D1279779

48.718

100

0.487
  pilB Vibrio cholerae strain A1552

45.714

89.744

0.41
  pilB Legionella pneumophila strain ERS1305867

38.462

100

0.385

Multiple sequence alignment