Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | AMD15_RS16820 | Genome accession | NZ_CP009001 |
| Coordinates | 3795699..3796955 (+) | Length | 418 a.a. |
| NCBI ID | WP_040107659.1 | Uniprot ID | A0AAI7ZHE3 |
| Organism | Xanthomonas citri pv. citri strain MN11 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3790699..3801955
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AMD15_RS16795 (J163_03401) | - | 3791626..3791793 (-) | 168 | WP_015463523.1 | hypothetical protein | - |
| AMD15_RS16800 (J163_03402) | pilB | 3791925..3792044 (-) | 120 | WP_005915819.1 | hypothetical protein | Machinery gene |
| AMD15_RS16805 (J163_03403) | pilB | 3792538..3794274 (-) | 1737 | WP_011052125.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| AMD15_RS16810 (J163_03404) | - | 3794338..3794793 (-) | 456 | WP_015463526.1 | pilin | - |
| AMD15_RS16815 (J163_03405) | - | 3794903..3795343 (-) | 441 | WP_011052127.1 | pilin | - |
| AMD15_RS16820 (J163_03406) | pilC | 3795699..3796955 (+) | 1257 | WP_040107659.1 | type II secretion system F family protein | Machinery gene |
| AMD15_RS16825 (J163_03407) | - | 3796962..3797825 (+) | 864 | WP_003491180.1 | A24 family peptidase | - |
| AMD15_RS16830 (J163_03408) | coaE | 3797839..3798447 (+) | 609 | WP_011052129.1 | dephospho-CoA kinase | - |
Sequence
Protein
Download Length: 418 a.a. Molecular weight: 45374.73 Da Isoelectric Point: 10.2788
>NTDB_id=126028 AMD15_RS16820 WP_040107659.1 3795699..3796955(+) (pilC) [Xanthomonas citri pv. citri strain MN11]
MSAARSVVKTKTAASAEQMSPFVWEGTDKRGVKMKGEQTARNANLLRAELRRQGITPLVVKVKPKPLFGAAGKKVSAKDI
SFFSRQMATMMKSGVPIVGALEIIGSGQKNPRMRTMVGQIRTDIEGGASLYEAVSKHPVQFDELYRNLVKAGEGAGVLET
VLDTVATYKENLEALKGKIKKALFYPAMVMAVAMLVSAILLVWVVPQFEDVFKGFGAELPAFTQMIVNLSRFMVSWWWLM
LFALVGAAIGSVFAYKRSPAMQHGMDRLVLKVPIIGQIMHNSSIARFARTTAVTFKAGVPLVEALGIVAGATGNSVYEKA
VLRMREDVSVGYPVNVAMKQVNLFPHMVVQMTAIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLIEPLIMVFIGTIVG
GMVIGMYLPIFKLASVVG
MSAARSVVKTKTAASAEQMSPFVWEGTDKRGVKMKGEQTARNANLLRAELRRQGITPLVVKVKPKPLFGAAGKKVSAKDI
SFFSRQMATMMKSGVPIVGALEIIGSGQKNPRMRTMVGQIRTDIEGGASLYEAVSKHPVQFDELYRNLVKAGEGAGVLET
VLDTVATYKENLEALKGKIKKALFYPAMVMAVAMLVSAILLVWVVPQFEDVFKGFGAELPAFTQMIVNLSRFMVSWWWLM
LFALVGAAIGSVFAYKRSPAMQHGMDRLVLKVPIIGQIMHNSSIARFARTTAVTFKAGVPLVEALGIVAGATGNSVYEKA
VLRMREDVSVGYPVNVAMKQVNLFPHMVVQMTAIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLIEPLIMVFIGTIVG
GMVIGMYLPIFKLASVVG
Nucleotide
Download Length: 1257 bp
>NTDB_id=126028 AMD15_RS16820 WP_040107659.1 3795699..3796955(+) (pilC) [Xanthomonas citri pv. citri strain MN11]
ATGTCAGCAGCACGTAGCGTAGTCAAGACGAAGACCGCCGCATCGGCGGAGCAGATGAGTCCGTTTGTCTGGGAGGGGAC
AGACAAGCGCGGCGTCAAGATGAAAGGCGAACAAACGGCCCGCAATGCAAATCTGCTGCGCGCCGAGTTACGGCGCCAGG
GCATTACTCCTCTCGTCGTGAAAGTTAAGCCGAAACCACTATTCGGCGCTGCCGGAAAGAAAGTTTCCGCAAAAGACATT
TCATTTTTCAGCCGACAGATGGCAACCATGATGAAGTCCGGCGTGCCGATTGTCGGCGCGCTGGAGATCATTGGCAGCGG
CCAAAAGAATCCGCGCATGCGCACAATGGTCGGACAGATTAGGACAGATATCGAAGGGGGGGCATCGCTCTACGAAGCCG
TAAGCAAGCACCCGGTGCAATTTGATGAGCTCTATCGGAATTTGGTCAAGGCAGGCGAAGGCGCAGGGGTACTGGAAACT
GTGCTCGACACCGTCGCCACTTACAAAGAAAACCTTGAAGCCCTGAAAGGCAAGATCAAGAAGGCACTGTTCTACCCTGC
CATGGTAATGGCAGTGGCGATGTTGGTCAGTGCAATCCTGCTTGTTTGGGTGGTTCCCCAATTTGAAGATGTCTTCAAGG
GCTTTGGAGCGGAGCTGCCTGCGTTCACACAGATGATCGTCAACCTGTCTCGCTTTATGGTGTCTTGGTGGTGGCTGATG
CTGTTCGCACTTGTTGGCGCTGCGATTGGGTCTGTTTTCGCATACAAGCGTTCACCAGCAATGCAACATGGCATGGACCG
CCTGGTGCTAAAAGTGCCGATCATTGGTCAGATCATGCACAACAGCTCAATTGCAAGATTCGCCCGGACGACGGCGGTGA
CCTTCAAGGCCGGCGTACCGCTAGTCGAGGCGCTGGGCATCGTGGCCGGTGCTACAGGTAATTCGGTCTACGAAAAAGCA
GTACTGCGCATGCGCGAAGACGTCTCCGTGGGCTACCCGGTCAACGTCGCGATGAAACAGGTCAACCTGTTTCCGCATAT
GGTGGTGCAGATGACCGCCATCGGTGAAGAAGCGGGCGCGCTGGATGCCATGCTGTTCAAGGTAGCGGAGTATTTCGAGC
AGGAAGTCAACAACGCGGTCGATGCGCTCAGCAGCCTGATCGAACCCCTGATCATGGTGTTCATTGGTACCATCGTCGGC
GGCATGGTCATCGGCATGTACCTGCCTATCTTCAAGCTCGCCTCGGTGGTTGGATAA
ATGTCAGCAGCACGTAGCGTAGTCAAGACGAAGACCGCCGCATCGGCGGAGCAGATGAGTCCGTTTGTCTGGGAGGGGAC
AGACAAGCGCGGCGTCAAGATGAAAGGCGAACAAACGGCCCGCAATGCAAATCTGCTGCGCGCCGAGTTACGGCGCCAGG
GCATTACTCCTCTCGTCGTGAAAGTTAAGCCGAAACCACTATTCGGCGCTGCCGGAAAGAAAGTTTCCGCAAAAGACATT
TCATTTTTCAGCCGACAGATGGCAACCATGATGAAGTCCGGCGTGCCGATTGTCGGCGCGCTGGAGATCATTGGCAGCGG
CCAAAAGAATCCGCGCATGCGCACAATGGTCGGACAGATTAGGACAGATATCGAAGGGGGGGCATCGCTCTACGAAGCCG
TAAGCAAGCACCCGGTGCAATTTGATGAGCTCTATCGGAATTTGGTCAAGGCAGGCGAAGGCGCAGGGGTACTGGAAACT
GTGCTCGACACCGTCGCCACTTACAAAGAAAACCTTGAAGCCCTGAAAGGCAAGATCAAGAAGGCACTGTTCTACCCTGC
CATGGTAATGGCAGTGGCGATGTTGGTCAGTGCAATCCTGCTTGTTTGGGTGGTTCCCCAATTTGAAGATGTCTTCAAGG
GCTTTGGAGCGGAGCTGCCTGCGTTCACACAGATGATCGTCAACCTGTCTCGCTTTATGGTGTCTTGGTGGTGGCTGATG
CTGTTCGCACTTGTTGGCGCTGCGATTGGGTCTGTTTTCGCATACAAGCGTTCACCAGCAATGCAACATGGCATGGACCG
CCTGGTGCTAAAAGTGCCGATCATTGGTCAGATCATGCACAACAGCTCAATTGCAAGATTCGCCCGGACGACGGCGGTGA
CCTTCAAGGCCGGCGTACCGCTAGTCGAGGCGCTGGGCATCGTGGCCGGTGCTACAGGTAATTCGGTCTACGAAAAAGCA
GTACTGCGCATGCGCGAAGACGTCTCCGTGGGCTACCCGGTCAACGTCGCGATGAAACAGGTCAACCTGTTTCCGCATAT
GGTGGTGCAGATGACCGCCATCGGTGAAGAAGCGGGCGCGCTGGATGCCATGCTGTTCAAGGTAGCGGAGTATTTCGAGC
AGGAAGTCAACAACGCGGTCGATGCGCTCAGCAGCCTGATCGAACCCCTGATCATGGTGTTCATTGGTACCATCGTCGGC
GGCATGGTCATCGGCATGTACCTGCCTATCTTCAAGCTCGCCTCGGTGGTTGGATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Pseudomonas stutzeri DSM 10701 |
53.086 |
96.89 |
0.514 |
| pilC | Acinetobacter baylyi ADP1 |
51.843 |
97.368 |
0.505 |
| pilC | Acinetobacter baumannii D1279779 |
51.613 |
96.411 |
0.498 |
| pilC | Legionella pneumophila strain ERS1305867 |
52.525 |
94.737 |
0.498 |
| pilG | Neisseria meningitidis 44/76-A |
42.963 |
96.89 |
0.416 |
| pilG | Neisseria gonorrhoeae MS11 |
42.822 |
96.651 |
0.414 |
| pilC | Vibrio cholerae strain A1552 |
41.814 |
94.976 |
0.397 |
| pilC | Vibrio campbellii strain DS40M4 |
39.95 |
96.411 |
0.385 |