Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilB   Type   Machinery gene
Locus tag   AMD15_RS16800 Genome accession   NZ_CP009001
Coordinates   3791925..3792044 (-) Length   39 a.a.
NCBI ID   WP_005915819.1    Uniprot ID   A0A7S6YV99
Organism   Xanthomonas citri pv. citri strain MN11     
Function   power the assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3786925..3797044
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AMD15_RS16785 (J163_03398) - 3788071..3789684 (+) 1614 WP_003488599.1 HAMP domain-containing sensor histidine kinase -
  AMD15_RS16790 (J163_03399) pilR 3790009..3791403 (+) 1395 WP_015463522.1 sigma-54 dependent transcriptional regulator Regulator
  AMD15_RS16795 (J163_03401) - 3791626..3791793 (-) 168 WP_015463523.1 hypothetical protein -
  AMD15_RS16800 (J163_03402) pilB 3791925..3792044 (-) 120 WP_005915819.1 hypothetical protein Machinery gene
  AMD15_RS16805 (J163_03403) pilB 3792538..3794274 (-) 1737 WP_011052125.1 type IV-A pilus assembly ATPase PilB Machinery gene
  AMD15_RS16810 (J163_03404) - 3794338..3794793 (-) 456 WP_015463526.1 pilin -
  AMD15_RS16815 (J163_03405) - 3794903..3795343 (-) 441 WP_011052127.1 pilin -
  AMD15_RS16820 (J163_03406) pilC 3795699..3796955 (+) 1257 WP_040107659.1 type II secretion system F family protein Machinery gene

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4178.84 Da        Isoelectric Point: 9.0113

>NTDB_id=126026 AMD15_RS16800 WP_005915819.1 3791925..3792044(-) (pilB) [Xanthomonas citri pv. citri strain MN11]
MQIAEAAQAIGIRDLRQSALMKAAHGVTSLAEINRVTKD

Nucleotide


Download         Length: 120 bp        

>NTDB_id=126026 AMD15_RS16800 WP_005915819.1 3791925..3792044(-) (pilB) [Xanthomonas citri pv. citri strain MN11]
ATGCAGATCGCCGAGGCCGCACAGGCGATCGGTATCCGCGATTTGCGGCAGTCGGCGTTGATGAAGGCTGCGCACGGGGT
GACCAGCCTGGCGGAGATCAATCGTGTGACGAAGGACTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilB Acinetobacter baylyi ADP1

51.282

100

0.513
  pilB Acinetobacter baumannii D1279779

48.718

100

0.487
  pilB Vibrio cholerae strain A1552

45.714

89.744

0.41
  pilB Legionella pneumophila strain ERS1305867

38.462

100

0.385

Multiple sequence alignment