Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   FE36_RS14125 Genome accession   NZ_CP007810
Coordinates   3219952..3221211 (+) Length   419 a.a.
NCBI ID   WP_047340536.1    Uniprot ID   -
Organism   Xanthomonas oryzae pv. oryzicola strain YM15     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3214952..3226211
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FE36_RS14105 (FE36_14880) - 3215312..3216838 (-) 1527 WP_047340101.1 membrane protein -
  FE36_RS14110 (FE36_14885) - 3216808..3217437 (-) 630 WP_024711608.1 hypothetical protein -
  FE36_RS14115 (FE36_14890) - 3217448..3219037 (-) 1590 WP_014504322.1 phosphoethanolamine transferase -
  FE36_RS14120 (FE36_14895) pilA2 3219173..3219598 (-) 426 WP_047340102.1 pilin Machinery gene
  FE36_RS14125 (FE36_14900) pilC 3219952..3221211 (+) 1260 WP_047340536.1 type II secretion system F family protein Machinery gene
  FE36_RS14130 (FE36_14905) - 3221218..3222081 (+) 864 WP_047340103.1 A24 family peptidase -
  FE36_RS14135 (FE36_14910) coaE 3222095..3222703 (+) 609 WP_014504326.1 dephospho-CoA kinase -
  FE36_RS24175 - 3222811..3223106 (+) 296 Protein_2846 SymE family type I addiction module toxin -
  FE36_RS14145 (FE36_14920) - 3223205..3224539 (-) 1335 WP_047340105.1 HAMP domain-containing sensor histidine kinase -
  FE36_RS14150 (FE36_14925) - 3224532..3225209 (-) 678 WP_003490678.1 response regulator transcription factor -
  FE36_RS14155 (FE36_14930) - 3225287..3225676 (-) 390 WP_014504334.1 hypothetical protein -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 46094.63 Da        Isoelectric Point: 10.2301

>NTDB_id=123555 FE36_RS14125 WP_047340536.1 3219952..3221211(+) (pilC) [Xanthomonas oryzae pv. oryzicola strain YM15]
MSVARSAIKKQPVDRNTSMLQTFIWEGADKRGVKMKGEQTARNANMLRAELRRQGIVPSMVKQKPKPLFGAAGKKITPKE
IAFFSRQMATMMKSGVPIVSSLEIIGEGHKNPRMKKMVGQIRTDIEGGSSLYESISKHPVQFDELYRNLVRAGEGAGVLE
TVLETVATYKENIEALKGKIKKAMFYPAMVVAVAIIVSAILLIFVVPQFEEVFKSFGAELPAFTQLLVNASRFMVSYWWL
MLMVTVGSVVGFIFAYKRSPRMQHGLDRLILKVPVIGQIMHNSAIARFARTTAVTFKAGVPLVEALGIVAGATGNKLYEE
AVFRMRDDVSVGYPVNMAMKQVNLFPHMVIQMTAIGEEAGALDAMLFKVAEYFEDEVNNAVDALSSLLEPLIMVFIGTIV
GGMVIGMYLPIFKLGAVVG

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=123555 FE36_RS14125 WP_047340536.1 3219952..3221211(+) (pilC) [Xanthomonas oryzae pv. oryzicola strain YM15]
ATGTCAGTCGCGCGTAGCGCCATCAAGAAGCAACCGGTCGACCGAAACACCAGCATGCTGCAGACCTTCATTTGGGAAGG
GGCTGACAAGCGTGGCGTGAAGATGAAGGGAGAGCAGACAGCCCGCAACGCCAATATGTTGCGAGCAGAGCTGCGCCGTC
AGGGTATCGTGCCCAGCATGGTGAAGCAAAAGCCGAAGCCTCTGTTCGGAGCGGCGGGGAAGAAAATTACCCCTAAAGAA
ATTGCGTTCTTTAGCCGCCAGATGGCGACGATGATGAAGTCGGGCGTGCCCATCGTCAGTTCGTTGGAGATCATTGGCGA
GGGACACAAGAACCCACGCATGAAAAAAATGGTCGGCCAGATCAGGACAGATATCGAGGGTGGATCCTCGCTCTACGAGT
CCATCAGCAAACATCCCGTTCAGTTTGACGAGCTCTATCGCAACCTCGTCCGCGCGGGCGAAGGCGCTGGCGTACTGGAG
ACAGTCCTCGAAACGGTCGCTACCTACAAAGAAAACATTGAAGCCCTGAAGGGCAAGATCAAAAAGGCAATGTTCTACCC
TGCCATGGTGGTTGCGGTGGCAATCATCGTGAGTGCGATTTTGCTCATCTTCGTGGTGCCTCAGTTCGAGGAAGTATTCA
AGAGCTTCGGTGCCGAACTACCGGCATTCACTCAGCTCCTCGTCAACGCATCGCGCTTCATGGTCAGCTATTGGTGGTTG
ATGCTGATGGTGACAGTTGGATCTGTCGTTGGCTTCATCTTTGCCTACAAACGTTCTCCACGGATGCAGCATGGACTTGA
TCGATTGATCCTCAAGGTGCCCGTAATCGGGCAGATCATGCACAACAGTGCGATTGCACGCTTTGCACGGACCACTGCAG
TGACATTCAAGGCAGGCGTTCCTCTAGTTGAGGCACTTGGGATCGTAGCTGGCGCTACTGGCAATAAGCTTTATGAAGAG
GCTGTTTTCAGGATGCGGGACGATGTGTCTGTGGGTTACCCGGTCAACATGGCGATGAAACAGGTAAACCTATTTCCACA
CATGGTTATTCAAATGACTGCGATTGGCGAAGAAGCCGGCGCACTTGATGCAATGCTCTTCAAAGTGGCTGAATACTTTG
AGGATGAGGTCAATAATGCCGTGGATGCACTCAGCAGCCTGCTCGAGCCACTGATCATGGTCTTCATCGGCACGATCGTC
GGCGGCATGGTCATCGGCATGTATCTTCCGATCTTCAAACTCGGCGCAGTGGTGGGTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

52.709

96.897

0.511
  pilC Pseudomonas stutzeri DSM 10701

53.788

94.511

0.508
  pilC Acinetobacter baylyi ADP1

50.617

96.659

0.489
  pilC Acinetobacter baumannii D1279779

50.37

96.659

0.487
  pilG Neisseria gonorrhoeae MS11

43.358

95.227

0.413
  pilG Neisseria meningitidis 44/76-A

42.75

95.465

0.408
  pilC Vibrio cholerae strain A1552

40.25

95.465

0.384
  pilC Vibrio campbellii strain DS40M4

38.75

95.465

0.37

Multiple sequence alignment