Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   BRLA_RS15520 Genome accession   NZ_CP007806
Coordinates   3570299..3571543 (-) Length   414 a.a.
NCBI ID   WP_003337005.1    Uniprot ID   -
Organism   Brevibacillus laterosporus LMG 15441     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 3565299..3576543
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BRLA_RS15505 (BRLA_c032140) - 3566719..3567378 (-) 660 WP_003337008.1 RecX family transcriptional regulator -
  BRLA_RS15510 (BRLA_c032150) recA 3567460..3568518 (-) 1059 WP_003337007.1 recombinase RecA Machinery gene
  BRLA_RS15515 (BRLA_c032160) - 3568693..3570282 (-) 1590 WP_003337006.1 DEAD/DEAH box helicase -
  BRLA_RS15520 (BRLA_c032170) cinA 3570299..3571543 (-) 1245 WP_003337005.1 competence/damage-inducible protein A Machinery gene
  BRLA_RS15525 (BRLA_c032180) pgsA 3571563..3572138 (-) 576 WP_003337004.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  BRLA_RS15530 (BRLA_c032190) rimO 3572139..3573482 (-) 1344 WP_003337003.1 30S ribosomal protein S12 methylthiotransferase RimO -
  BRLA_RS15535 (BRLA_c032200) - 3573726..3574652 (-) 927 WP_003337002.1 RodZ domain-containing protein -
  BRLA_RS15540 (BRLA_c032210) - 3574665..3575456 (-) 792 WP_018670903.1 DUF3388 domain-containing protein -
  BRLA_RS15545 (BRLA_c032220) - 3575790..3576047 (-) 258 WP_003337000.1 DUF3243 domain-containing protein -

Sequence

Protein


Download         Length: 414 a.a.        Molecular weight: 45709.14 Da        Isoelectric Point: 5.0032

>NTDB_id=123527 BRLA_RS15520 WP_003337005.1 3570299..3571543(-) (cinA) [Brevibacillus laterosporus LMG 15441]
MKAEIIAVGTELLLGQIANTNAQFLSQKLAEVGINVYYHITVGDNYERMLQVIERAKSRSDLIIFTGGLGPTQDDLTKDV
VADHLGHKLVTDEKAMANIRDFFERRGTDMTENNRKQALVIEGSTVFDNDHGMAPGMGITQEGVTYVLLPGPPSEMYPMM
ENYVMPFLASLGNEHQIFHSRVFRFFGIGESLLEAKLIDLIEEQSNPTIAPYAKEFEVTLRITARATSVEQAERLLRPVE
EEIRNRVGEFIYAVGESPLHQVLYEQLLVKQETISFAESCTGGTVSQLLTSVPGASQVYRGGIVCYSNEIKHQWLDVPLE
VLETEGAVSETTARLLAENIRQKMGTTYGVSVTGVAGPESSEGKPVGLVYIGIASEKQPTLVKKVQVAGQRRAIIGRVAK
NALYYALQQLHCND

Nucleotide


Download         Length: 1245 bp        

>NTDB_id=123527 BRLA_RS15520 WP_003337005.1 3570299..3571543(-) (cinA) [Brevibacillus laterosporus LMG 15441]
ATGAAAGCGGAAATAATCGCGGTTGGAACTGAGTTATTACTTGGACAAATTGCTAATACAAACGCGCAGTTTTTATCGCA
AAAGCTAGCAGAAGTAGGAATCAATGTTTATTATCACATAACAGTTGGCGATAATTATGAACGAATGCTACAAGTGATAG
AACGTGCGAAATCGCGTTCCGATCTCATCATTTTTACCGGGGGGTTGGGCCCTACGCAGGATGATTTGACCAAAGACGTA
GTGGCCGACCATCTTGGTCACAAGCTAGTCACGGATGAAAAAGCAATGGCGAACATTCGTGATTTTTTTGAGAGACGCGG
TACTGACATGACTGAAAATAATCGTAAGCAAGCCCTTGTAATTGAGGGATCGACAGTCTTTGATAATGATCACGGAATGG
CACCAGGAATGGGGATTACCCAAGAGGGCGTTACATATGTCTTGTTGCCTGGTCCCCCAAGCGAAATGTATCCGATGATG
GAAAATTATGTGATGCCGTTTTTGGCTTCTTTAGGAAATGAGCATCAAATCTTTCATTCTCGTGTCTTTCGCTTTTTTGG
TATCGGAGAATCTCTGTTAGAGGCAAAGTTGATAGACTTAATTGAGGAGCAATCCAATCCGACAATTGCCCCCTATGCCA
AGGAGTTTGAGGTGACGTTGCGCATTACGGCTCGCGCTACCTCTGTGGAGCAAGCAGAGAGATTGCTACGTCCTGTTGAA
GAGGAGATTCGCAATCGTGTAGGTGAGTTTATATATGCAGTAGGGGAATCTCCGTTGCATCAGGTGCTTTATGAGCAGCT
ACTAGTAAAACAAGAGACGATTTCTTTTGCTGAAAGCTGTACAGGGGGCACTGTTTCACAACTGCTTACCTCGGTTCCCG
GTGCGTCGCAGGTATATCGAGGAGGAATTGTTTGCTATTCCAATGAAATCAAGCATCAATGGCTGGATGTGCCTCTTGAA
GTCTTAGAGACAGAAGGGGCTGTCAGTGAAACAACGGCTCGGCTTTTAGCTGAGAATATTCGCCAAAAGATGGGCACAAC
CTATGGCGTTTCTGTTACCGGTGTAGCAGGACCTGAGTCTTCCGAGGGAAAACCTGTGGGACTGGTCTATATCGGAATCG
CCAGTGAGAAGCAGCCTACTTTGGTAAAAAAGGTGCAAGTTGCGGGACAGCGCAGAGCGATAATTGGGCGTGTTGCCAAG
AATGCTCTATATTATGCGCTCCAGCAGCTTCACTGTAATGACTAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(258-409)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

51.707

99.034

0.512
  cinA Streptococcus mitis NCTC 12261

48.039

98.551

0.473
  cinA Streptococcus mitis SK321

47.794

98.551

0.471
  cinA Streptococcus pneumoniae TIGR4

47.549

98.551

0.469
  cinA Streptococcus pneumoniae Rx1

47.304

98.551

0.466
  cinA Streptococcus pneumoniae R6

47.304

98.551

0.466
  cinA Streptococcus pneumoniae D39

47.059

98.551

0.464
  cinA Streptococcus mutans UA159

46.898

97.343

0.457
  cinA Streptococcus suis isolate S10

43.799

91.546

0.401

Multiple sequence alignment