Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   M0579_RS05330 Genome accession   NZ_CP007668
Coordinates   1082232..1082738 (+) Length   168 a.a.
NCBI ID   WP_002224218.1    Uniprot ID   -
Organism   Neisseria meningitidis M0579     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1077232..1087738
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M0579_RS05300 (M0579_00980) - 1077317..1077670 (+) 354 Protein_974 pilin -
  M0579_RS05305 (M0579_00981) - 1077903..1078277 (+) 375 Protein_975 pilin -
  M0579_RS05310 (M0579_00982) - 1078318..1078719 (+) 402 Protein_976 pilin -
  M0579_RS05315 (M0579_00983) pilE 1079140..1079577 (+) 438 WP_029682316.1 pilin Machinery gene
  M0579_RS16105 - 1079778..1080170 (+) 393 Protein_978 pilin -
  M0579_RS15780 - 1080189..1080542 (+) 354 Protein_979 pilin -
  M0579_RS05325 (M0579_00985) - 1081088..1081468 (+) 381 Protein_980 pilin -
  M0579_RS05330 (M0579_00987) pilE 1082232..1082738 (+) 507 WP_002224218.1 pilin Machinery gene
  M0579_RS05340 (M0579_00988) lpxC 1083738..1084661 (+) 924 WP_002216134.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  M0579_RS05355 (M0579_00989) gnd 1085885..1087333 (+) 1449 WP_002224217.1 decarboxylating NADP(+)-dependent phosphogluconate dehydrogenase -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 17748.09 Da        Isoelectric Point: 7.8426

>NTDB_id=122234 M0579_RS05330 WP_002224218.1 1082232..1082738(+) (pilE) [Neisseria meningitidis M0579]
MNTLQKGFTLIELMIVIAIVGILAAVALPAYQDYTARAQVSEAILLAEGQKSAVTEYYLNHGEWPGNNSDAGVASSTDIK
GKYVQSVEVKNGVVTATMASSNVNNEIKGKKLSLWAKRQAGSVKWFCGQPVTRANTATDAAITADTDTNGKIDTKHLPST
CRDAASAG

Nucleotide


Download         Length: 507 bp        

>NTDB_id=122234 M0579_RS05330 WP_002224218.1 1082232..1082738(+) (pilE) [Neisseria meningitidis M0579]
ATGAACACCCTTCAAAAAGGTTTTACCCTTATCGAGCTGATGATTGTGATTGCCATCGTCGGCATTTTGGCGGCAGTCGC
CCTTCCTGCTTATCAAGACTACACAGCCCGCGCACAAGTTTCCGAAGCCATTCTTTTGGCTGAAGGTCAAAAATCAGCCG
TCACAGAGTATTACCTGAATCACGGCGAATGGCCCGGCAACAACAGTGATGCCGGCGTGGCATCCTCAACCGACATCAAA
GGCAAATATGTTCAAAGCGTTGAAGTCAAAAACGGCGTCGTTACCGCCACAATGGCTTCAAGCAACGTAAACAACGAAAT
CAAAGGCAAAAAACTCTCCCTGTGGGCCAAGCGTCAAGCCGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTACGCGCG
CCAACACCGCCACCGACGCCGCCATCACCGCCGACACCGACACCAACGGCAAGATCGACACCAAGCACCTACCGTCAACC
TGCCGCGATGCAGCATCTGCCGGCTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(36-162)

Prokaryotic N-terminal methylation motif (N_methyl)

(5-28)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae MS11

82.635

99.405

0.821
  pilE Neisseria gonorrhoeae strain FA1090

79.042

99.405

0.786
  pilE Neisseria elongata subsp. glycolytica ATCC 29315

33.846

100

0.393
  comP Acinetobacter baylyi ADP1

38.922

99.405

0.387
  pilA/pilA1 Eikenella corrodens VA1

36.364

100

0.381
  pilA Ralstonia pseudosolanacearum GMI1000

36.471

100

0.369
  pilA2 Legionella pneumophila strain ERS1305867

38.125

95.238

0.363

Multiple sequence alignment