Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   M0579_RS05315 Genome accession   NZ_CP007668
Coordinates   1079140..1079577 (+) Length   145 a.a.
NCBI ID   WP_029682316.1    Uniprot ID   -
Organism   Neisseria meningitidis M0579     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1074140..1084577
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M0579_RS05280 (M0579_00976) - 1075171..1076124 (-) 954 WP_002218457.1 D-2-hydroxyacid dehydrogenase -
  M0579_RS05285 (M0579_00977) - 1076246..1076464 (+) 219 WP_002218456.1 DUF2061 domain-containing protein -
  M0579_RS05290 (M0579_00978) - 1076542..1076871 (+) 330 WP_002218455.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  M0579_RS16575 (M0579_00979) - 1076900..1077265 (+) 366 Protein_973 pilin -
  M0579_RS05300 (M0579_00980) - 1077317..1077670 (+) 354 Protein_974 pilin -
  M0579_RS05305 (M0579_00981) - 1077903..1078277 (+) 375 Protein_975 pilin -
  M0579_RS05310 (M0579_00982) - 1078318..1078719 (+) 402 Protein_976 pilin -
  M0579_RS05315 (M0579_00983) pilE 1079140..1079577 (+) 438 WP_029682316.1 pilin Machinery gene
  M0579_RS16105 - 1079778..1080170 (+) 393 Protein_978 pilin -
  M0579_RS15780 - 1080189..1080542 (+) 354 Protein_979 pilin -
  M0579_RS05325 (M0579_00985) - 1081088..1081468 (+) 381 Protein_980 pilin -
  M0579_RS05330 (M0579_00987) pilE 1082232..1082738 (+) 507 WP_002224218.1 pilin Machinery gene

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 15867.71 Da        Isoelectric Point: 7.9781

>NTDB_id=122233 M0579_RS05315 WP_029682316.1 1079140..1079577(+) (pilE) [Neisseria meningitidis M0579]
MPTDLDSRLRGNDEAILLAEGQKSAVTEYYLNHGEWPGNNSDAGVASSTDIKGKYVQSVEVKNGVVTATMASSNVNNEIK
GKKLSLWAKRQDGSVKWFCGQPVKRADTDEVTADSGNDKIDTKLKKPFYPISFRTDKAGFPPARE

Nucleotide


Download         Length: 438 bp        

>NTDB_id=122233 M0579_RS05315 WP_029682316.1 1079140..1079577(+) (pilE) [Neisseria meningitidis M0579]
GTGCCGACAGACCTAGATTCCCGCCTGCGCGGGAATGACGAAGCCATTCTTTTGGCTGAAGGTCAAAAATCAGCCGTCAC
AGAGTATTACCTGAATCACGGCGAATGGCCCGGCAACAACAGTGATGCCGGCGTGGCATCCTCAACCGACATCAAAGGCA
AATATGTTCAAAGCGTTGAAGTCAAAAACGGCGTCGTTACCGCCACAATGGCTTCAAGCAACGTAAACAACGAAATCAAA
GGCAAAAAACTCTCCCTGTGGGCCAAGCGTCAAGACGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTAAGCGCGCCGA
CACCGACGAAGTCACCGCCGACAGCGGCAACGACAAAATCGACACCAAACTAAAGAAACCGTTTTACCCGATAAGTTTCC
GTACCGACAAGGCTGGATTCCCGCCTGCGCGGGAATGA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(14-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae MS11

71.2

86.207

0.614
  pilE Neisseria gonorrhoeae strain FA1090

68.8

86.207

0.593

Multiple sequence alignment