Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYD   Type   Machinery gene
Locus tag   DK43_RS08900 Genome accession   NZ_CP007573
Coordinates   1846038..1846436 (-) Length   132 a.a.
NCBI ID   WP_003028474.1    Uniprot ID   -
Organism   Streptococcus anginosus strain SA1     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1841038..1851436
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DK43_RS08875 (DK43_09095) - 1842778..1843977 (-) 1200 WP_003028479.1 acetate kinase -
  DK43_RS08880 (DK43_09100) comYH 1844024..1844977 (-) 954 WP_003028478.1 class I SAM-dependent methyltransferase Machinery gene
  DK43_RS08885 (DK43_09105) comGG 1845045..1845371 (-) 327 WP_003028477.1 competence type IV pilus minor pilin ComGG -
  DK43_RS08890 (DK43_09110) comGF/cglF 1845352..1845789 (-) 438 WP_003028476.1 competence type IV pilus minor pilin ComGF Machinery gene
  DK43_RS08895 (DK43_09115) comGE/cglE 1845773..1846066 (-) 294 WP_003028475.1 competence type IV pilus minor pilin ComGE Machinery gene
  DK43_RS08900 (DK43_09120) comYD 1846038..1846436 (-) 399 WP_003028474.1 competence type IV pilus minor pilin ComGD Machinery gene
  DK43_RS08905 (DK43_09125) comYC 1846426..1846743 (-) 318 WP_003028473.1 competence type IV pilus major pilin ComGC Machinery gene
  DK43_RS08910 (DK43_09130) comYB 1846740..1847762 (-) 1023 WP_003028472.1 competence type IV pilus assembly protein ComGB Machinery gene
  DK43_RS08915 (DK43_09135) comYA 1847704..1848645 (-) 942 WP_003028470.1 competence type IV pilus ATPase ComGA Machinery gene
  DK43_RS08920 (DK43_09140) - 1848715..1849080 (-) 366 WP_022525291.1 DUF1033 family protein -
  DK43_RS08925 (DK43_09145) glnA 1849265..1850611 (-) 1347 WP_022525292.1 type I glutamate--ammonia ligase -
  DK43_RS08930 (DK43_09150) - 1850650..1851009 (-) 360 WP_003028467.1 MerR family transcriptional regulator -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 15146.39 Da        Isoelectric Point: 9.9957

>NTDB_id=121239 DK43_RS08900 WP_003028474.1 1846038..1846436(-) (comYD) [Streptococcus anginosus strain SA1]
MQIKGFTLLESLLTLFITSFLLLAVSGSVRSSFEQVEEQIFFLEFEHFYRESQKLSSSAQSQLDMNFSRERISNGYNRLA
VPRSIQAPEDLTLHFDKAGGNSSLGKIVFQTKKQTVMYQLYLGNGKFKKTMR

Nucleotide


Download         Length: 399 bp        

>NTDB_id=121239 DK43_RS08900 WP_003028474.1 1846038..1846436(-) (comYD) [Streptococcus anginosus strain SA1]
TTGCAGATTAAGGGATTTACGCTTTTGGAAAGTTTGCTGACTTTATTTATAACGAGTTTCTTATTGCTTGCTGTATCGGG
CTCTGTTCGTTCTTCTTTTGAACAGGTGGAAGAGCAGATTTTCTTTCTGGAGTTTGAGCATTTTTATCGGGAAAGTCAGA
AGTTGAGCAGTTCAGCTCAAAGTCAATTGGACATGAATTTTTCTCGCGAGAGGATTTCCAATGGTTACAACCGTTTGGCG
GTTCCTCGTTCGATTCAAGCGCCAGAAGATTTGACGCTTCATTTTGATAAGGCAGGTGGTAATTCATCGCTCGGAAAGAT
TGTCTTTCAGACAAAAAAGCAGACAGTTATGTATCAATTATATCTAGGAAATGGAAAATTTAAGAAAACAATGCGTTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYD Streptococcus gordonii str. Challis substr. CH1

63.846

98.485

0.629
  comGD/cglD Streptococcus mitis NCTC 12261

56.589

97.727

0.553
  comGD/cglD Streptococcus mitis SK321

56.693

96.212

0.545
  comGD/cglD Streptococcus pneumoniae Rx1

56.693

96.212

0.545
  comGD/cglD Streptococcus pneumoniae D39

56.693

96.212

0.545
  comGD/cglD Streptococcus pneumoniae R6

56.693

96.212

0.545
  comGD/cglD Streptococcus pneumoniae TIGR4

55.906

96.212

0.538
  comYD Streptococcus mutans UA140

53.077

98.485

0.523
  comYD Streptococcus mutans UA159

53.077

98.485

0.523

Multiple sequence alignment