Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYB   Type   Machinery gene
Locus tag   DK43_RS08910 Genome accession   NZ_CP007573
Coordinates   1846740..1847762 (-) Length   340 a.a.
NCBI ID   WP_003028472.1    Uniprot ID   -
Organism   Streptococcus anginosus strain SA1     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1841740..1852762
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DK43_RS08875 (DK43_09095) - 1842778..1843977 (-) 1200 WP_003028479.1 acetate kinase -
  DK43_RS08880 (DK43_09100) comYH 1844024..1844977 (-) 954 WP_003028478.1 class I SAM-dependent methyltransferase Machinery gene
  DK43_RS08885 (DK43_09105) comGG 1845045..1845371 (-) 327 WP_003028477.1 competence type IV pilus minor pilin ComGG -
  DK43_RS08890 (DK43_09110) comGF/cglF 1845352..1845789 (-) 438 WP_003028476.1 competence type IV pilus minor pilin ComGF Machinery gene
  DK43_RS08895 (DK43_09115) comGE/cglE 1845773..1846066 (-) 294 WP_003028475.1 competence type IV pilus minor pilin ComGE Machinery gene
  DK43_RS08900 (DK43_09120) comYD 1846038..1846436 (-) 399 WP_003028474.1 competence type IV pilus minor pilin ComGD Machinery gene
  DK43_RS08905 (DK43_09125) comYC 1846426..1846743 (-) 318 WP_003028473.1 competence type IV pilus major pilin ComGC Machinery gene
  DK43_RS08910 (DK43_09130) comYB 1846740..1847762 (-) 1023 WP_003028472.1 competence type IV pilus assembly protein ComGB Machinery gene
  DK43_RS08915 (DK43_09135) comYA 1847704..1848645 (-) 942 WP_003028470.1 competence type IV pilus ATPase ComGA Machinery gene
  DK43_RS08920 (DK43_09140) - 1848715..1849080 (-) 366 WP_022525291.1 DUF1033 family protein -
  DK43_RS08925 (DK43_09145) glnA 1849265..1850611 (-) 1347 WP_022525292.1 type I glutamate--ammonia ligase -
  DK43_RS08930 (DK43_09150) - 1850650..1851009 (-) 360 WP_003028467.1 MerR family transcriptional regulator -
  DK43_RS08935 (DK43_09155) - 1851086..1851616 (-) 531 WP_003028466.1 aromatic acid exporter family protein -
  DK43_RS08940 (DK43_09160) - 1851767..1852450 (-) 684 WP_003028465.1 CHAP domain-containing protein -

Sequence

Protein


Download         Length: 340 a.a.        Molecular weight: 39106.15 Da        Isoelectric Point: 9.8316

>NTDB_id=121241 DK43_RS08910 WP_003028472.1 1846740..1847762(-) (comYB) [Streptococcus anginosus strain SA1]
MQQDISILNKQKRKKLSTVKQKKVVELLNNLFSSGFHLAEIIDFLKRSALLEEVYVDRMKEGLSTGKSFSDIMASLGFSD
NVVTQLSLAELHGNLSLSLSKIEEYLENVSKIKKKLVEVATYPFILFVFLIFIMLGLRNYLLPQLDRQNVATQIISNLPQ
LFLGSLGVVFVLLAIGFYWFQKNSKITTFGLLARLPFFGAFIQTYLTAYYAREWGNMIGQGLELSQIFQMMQGQRSAMFQ
EIGKDLEVALQNGQEFSKRVKTYPFFKKELGLMIEYGEVKSRLGRELEVYAQKTWETFFKRVHQAMNVIQPLVFVFVALM
IVLLYAAMLLPIYQNMEVQL

Nucleotide


Download         Length: 1023 bp        

>NTDB_id=121241 DK43_RS08910 WP_003028472.1 1846740..1847762(-) (comYB) [Streptococcus anginosus strain SA1]
ATGCAGCAGGACATATCAATCTTGAACAAGCAGAAGCGGAAAAAATTATCCACAGTTAAGCAGAAAAAGGTCGTAGAGTT
ACTGAATAATCTTTTTTCTAGTGGCTTTCATTTGGCAGAAATTATCGACTTTTTGAAGCGAAGTGCCTTGTTAGAAGAAG
TCTATGTGGACAGGATGAAAGAGGGGTTGTCAACAGGAAAGTCTTTTTCGGACATCATGGCAAGCTTAGGTTTTTCAGAT
AATGTAGTAACACAACTTTCGCTGGCAGAATTACACGGAAATCTCTCACTCAGCCTGAGTAAGATTGAGGAATACTTGGA
AAATGTCTCAAAAATTAAGAAAAAGTTGGTTGAAGTGGCGACTTATCCCTTTATTTTGTTTGTCTTTTTGATATTCATTA
TGCTGGGGTTACGTAATTATTTACTCCCGCAACTCGATCGTCAAAATGTAGCAACGCAGATTATCAGTAATTTGCCGCAA
CTTTTTCTGGGTTCATTAGGAGTAGTCTTTGTTTTGTTAGCGATAGGTTTTTATTGGTTCCAAAAAAACTCAAAAATAAC
AACATTTGGCTTGTTAGCTCGCCTTCCCTTTTTTGGCGCTTTTATTCAAACGTATTTGACAGCTTATTATGCGAGAGAAT
GGGGAAATATGATTGGTCAAGGTTTAGAACTTAGTCAGATTTTTCAGATGATGCAAGGACAACGCTCTGCTATGTTTCAA
GAAATTGGGAAAGATTTAGAAGTTGCACTGCAAAATGGTCAGGAATTTTCGAAAAGGGTTAAAACATACCCATTTTTTAA
AAAGGAATTGGGCTTGATGATCGAATACGGCGAAGTGAAGTCTAGATTGGGGCGTGAATTAGAAGTTTATGCTCAAAAAA
CATGGGAGACATTTTTTAAACGTGTTCACCAAGCGATGAATGTCATCCAACCACTAGTGTTTGTCTTTGTGGCTTTAATG
ATTGTATTGTTGTATGCAGCCATGTTGCTGCCAATTTATCAAAATATGGAGGTTCAATTATGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(26-143)

Type II secretion system (T2SS), protein F (T2SSF)

(211-331)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYB Streptococcus gordonii str. Challis substr. CH1

70.294

100

0.703
  comGB/cglB Streptococcus mitis NCTC 12261

67.761

98.529

0.668
  comGB/cglB Streptococcus mitis SK321

67.164

98.529

0.662
  comGB/cglB Streptococcus pneumoniae TIGR4

66.866

98.529

0.659
  comGB/cglB Streptococcus pneumoniae R6

66.866

98.529

0.659
  comGB/cglB Streptococcus pneumoniae Rx1

66.866

98.529

0.659
  comGB/cglB Streptococcus pneumoniae D39

66.866

98.529

0.659
  comYB Streptococcus mutans UA159

60.526

100

0.609
  comYB Streptococcus mutans UA140

60.234

100

0.606
  comGB Lactococcus lactis subsp. cremoris KW2

51.335

99.118

0.509

Multiple sequence alignment