Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   DK43_RS02110 Genome accession   NZ_CP007573
Coordinates   429746..431722 (+) Length   658 a.a.
NCBI ID   WP_022525151.1    Uniprot ID   -
Organism   Streptococcus anginosus strain SA1     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 424746..436722
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DK43_RS02090 (DK43_02170) tig 424763..426046 (+) 1284 WP_004224106.1 trigger factor -
  DK43_RS02095 (DK43_02175) rpoE 426284..426871 (+) 588 WP_022525152.1 DNA-directed RNA polymerase subunit delta -
  DK43_RS02100 (DK43_02180) - 427054..428664 (+) 1611 WP_004224101.1 CTP synthase -
  DK43_RS02105 (DK43_02185) - 428895..429581 (+) 687 WP_004224098.1 phenylalanine--tRNA ligase beta subunit-related protein -
  DK43_RS02110 (DK43_02190) amiA3 429746..431722 (+) 1977 WP_022525151.1 peptide ABC transporter substrate-binding protein Regulator
  DK43_RS02115 (DK43_02195) amiA3 431919..433898 (+) 1980 WP_022525150.1 peptide ABC transporter substrate-binding protein Regulator
  DK43_RS02120 (DK43_02200) amiC 434273..435769 (+) 1497 WP_022525149.1 ABC transporter permease Regulator
  DK43_RS02125 (DK43_02205) amiD 435769..436695 (+) 927 WP_003026180.1 oligopeptide ABC transporter permease OppC Regulator

Sequence

Protein


Download         Length: 658 a.a.        Molecular weight: 72496.08 Da        Isoelectric Point: 6.6800

>NTDB_id=121193 DK43_RS02110 WP_022525151.1 429746..431722(+) (amiA3) [Streptococcus anginosus strain SA1]
MKKSKIIAVAGLALLTSGLLAACSGSKSSSAETKFGYVYSSDPETLDYVTSGKATTSDLVTNGVDGLLENDKYGNLVPSM
AKSWTVSKDGLTYTYKLRKGAKWYTSEGEEYAEVKAQDFVTGLKHAADKKSEALYLVQNSIKGLDAYVNGQTKDFSTVGV
KAVDDYTVQYTLNKPEPYWNSKTTSAIMWPINAEFLKSKGNKFGQSTDPNSILYNGPFLMKAITAKSAVEYVKNKHYWDK
DKVNVDSIKLAYYDGQDQDSLARNFKDGAYTYARLFPASSNFSTFEKDFKDNIYTSEAGAGTAVLGLNIDRQTYNHTAKK
TDEEKNSTKKALLNKDFRQALNFALDRDSYAAQVNGKEGAAKAIRNMFVPSDFVQVGEKSFSDVVEEKLASYGDDWKGVK
LADSQNGLYNPDKAKAKFAKAKEALQAQGVQFPIHIDVPVIETSKNFVARMQSMKQSIEKVLGKENVVMDLNMMSEDDVM
NITYYAPNAASEDWDLSGIVSWTPDYQDPSTYLDILKSTSSDNTKTWFGFDSGSENAGAKAVGLDEYNKLVDEAGAETTD
IAKRYEKYAAAQAWLTDSSLVLPTMASTGAGTFVSRIQPFSGAFAQTGSKGSSTYFKYIKVGNDTVTKKDYEAAKKKWQK
EKAESNKKAQDELADHVK

Nucleotide


Download         Length: 1977 bp        

>NTDB_id=121193 DK43_RS02110 WP_022525151.1 429746..431722(+) (amiA3) [Streptococcus anginosus strain SA1]
ATGAAAAAAAGTAAAATCATCGCAGTTGCGGGGCTAGCTCTTTTAACGTCTGGTCTTTTAGCTGCTTGCTCGGGTTCGAA
ATCGAGCTCAGCTGAAACAAAATTTGGTTATGTGTATTCTAGTGATCCAGAAACTTTGGATTATGTAACATCAGGAAAAG
CAACCACTAGCGATCTTGTGACAAATGGAGTTGACGGATTGTTAGAAAATGACAAATATGGAAATCTTGTACCATCAATG
GCTAAGTCATGGACTGTATCAAAAGATGGTTTAACCTATACTTATAAACTTCGTAAGGGTGCCAAATGGTACACATCAGA
AGGGGAAGAATACGCAGAAGTTAAAGCGCAAGACTTTGTAACTGGTTTGAAACATGCTGCCGATAAAAAATCTGAGGCGC
TTTATTTGGTTCAAAACTCAATTAAAGGTTTAGATGCTTACGTGAATGGTCAAACAAAAGACTTTTCAACGGTAGGTGTG
AAAGCAGTTGATGATTATACTGTTCAGTATACATTGAACAAGCCAGAACCATATTGGAATTCTAAGACAACCTCTGCCAT
TATGTGGCCAATCAATGCCGAATTTTTGAAATCTAAAGGAAATAAATTTGGCCAATCAACAGACCCTAACTCAATCCTTT
ATAATGGACCATTCTTGATGAAAGCTATCACAGCAAAATCTGCGGTAGAATATGTTAAAAACAAACATTATTGGGATAAA
GATAAAGTAAATGTTGATAGCATCAAGTTGGCTTATTATGATGGTCAAGACCAAGATTCATTAGCACGTAACTTTAAAGA
TGGTGCTTATACGTATGCACGTCTCTTCCCAGCAAGTTCAAACTTTTCAACTTTTGAAAAGGACTTCAAAGACAATATCT
ATACATCAGAAGCTGGTGCAGGAACAGCAGTTTTAGGACTTAATATTGACCGTCAAACGTACAACCACACTGCTAAAAAA
ACAGATGAAGAAAAAAATTCAACGAAAAAAGCATTGTTGAATAAAGACTTCCGTCAAGCGCTGAACTTTGCGCTTGACCG
CGACTCTTACGCTGCACAAGTCAATGGTAAAGAGGGCGCTGCTAAAGCAATCCGCAATATGTTTGTACCGTCTGACTTTG
TCCAAGTTGGAGAAAAATCATTTAGCGATGTTGTAGAAGAAAAATTAGCTAGCTATGGTGATGACTGGAAGGGTGTCAAA
TTAGCAGATTCACAAAACGGTTTGTACAATCCAGACAAAGCAAAAGCGAAATTTGCAAAAGCAAAAGAAGCATTGCAAGC
TCAAGGTGTGCAATTCCCAATCCACATAGATGTTCCTGTAATTGAAACTTCTAAAAACTTTGTTGCTCGTATGCAATCTA
TGAAACAATCTATTGAAAAAGTGCTTGGCAAAGAAAATGTTGTCATGGACTTGAATATGATGTCAGAAGATGATGTAATG
AACATCACTTATTATGCTCCGAATGCAGCTAGCGAAGATTGGGATCTCTCAGGTATCGTTAGTTGGACTCCTGACTATCA
AGACCCATCTACTTATCTTGACATTTTGAAATCAACATCTTCTGATAATACGAAAACTTGGTTTGGATTTGACTCTGGTA
GTGAAAATGCTGGTGCTAAAGCAGTTGGCTTGGACGAATATAATAAATTAGTCGATGAAGCAGGTGCAGAAACAACAGAC
ATTGCAAAACGTTATGAAAAATATGCAGCAGCACAAGCTTGGTTAACAGACAGTTCACTTGTCTTACCAACAATGGCTTC
AACAGGTGCCGGAACTTTTGTGTCACGCATTCAACCGTTCTCAGGTGCATTTGCGCAAACAGGTAGTAAAGGTAGCTCAA
CCTACTTCAAATACATTAAAGTCGGTAACGATACTGTCACTAAGAAAGACTATGAAGCAGCTAAGAAGAAATGGCAAAAA
GAAAAAGCCGAGTCTAATAAAAAAGCTCAAGATGAATTAGCTGATCATGTAAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(76-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

63.581

100

0.637
  amiA3 Streptococcus thermophilus LMG 18311

63.429

100

0.635
  amiA Streptococcus salivarius strain HSISS4

63.222

100

0.632

Multiple sequence alignment