Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYA   Type   Machinery gene
Locus tag   STAB1101_RS00645 Genome accession   NZ_CP007240
Coordinates   102158..103096 (+) Length   312 a.a.
NCBI ID   WP_002993471.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain 7F7     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 97158..108096
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STAB1101_RS00635 (STAB1101_00635) rpoC 97925..101548 (+) 3624 WP_011527438.1 DNA-directed RNA polymerase subunit beta' -
  STAB1101_RS00640 (STAB1101_00640) - 101700..102065 (+) 366 WP_002986560.1 DUF1033 family protein -
  STAB1101_RS00645 (STAB1101_00645) comYA 102158..103096 (+) 939 WP_002993471.1 competence type IV pilus ATPase ComGA Machinery gene
  STAB1101_RS00650 (STAB1101_00650) comGB 103032..104067 (+) 1036 Protein_82 competence type IV pilus assembly protein ComGB -
  STAB1101_RS00655 (STAB1101_00655) comYC 104069..104395 (+) 327 WP_002986552.1 competence type IV pilus major pilin ComGC Machinery gene
  STAB1101_RS00660 (STAB1101_00660) comGD 104370..104798 (+) 429 WP_023605232.1 competence type IV pilus minor pilin ComGD -
  STAB1101_RS00665 (STAB1101_00665) comGE 104755..105039 (+) 285 WP_011284422.1 competence type IV pilus minor pilin ComGE -
  STAB1101_RS00670 (STAB1101_00670) comYF 105032..105466 (+) 435 WP_002992738.1 competence type IV pilus minor pilin ComGF Machinery gene
  STAB1101_RS00675 (STAB1101_00675) comGG 105450..105776 (+) 327 WP_002992739.1 competence type IV pilus minor pilin ComGG -
  STAB1101_RS00680 (STAB1101_00680) comYH 105874..106827 (+) 954 WP_023610092.1 class I SAM-dependent methyltransferase Machinery gene
  STAB1101_RS00685 (STAB1101_00685) - 106886..108082 (+) 1197 WP_038431193.1 acetate kinase -

Sequence

Protein


Download         Length: 312 a.a.        Molecular weight: 35032.27 Da        Isoelectric Point: 8.5799

>NTDB_id=118009 STAB1101_RS00645 WP_002993471.1 102158..103096(+) (comYA) [Streptococcus pyogenes strain 7F7]
MVQALAKAILAKAEQVQAQDIYILPRADQYDLFLRIGDERRLVDVYQSDRMAPLISHFKFVAGMIVGEKRRCQVGSCDYK
LSKDKQLSLRLSSVGDYRGQESLVIRLLHHQNKSVHYWFDGLTKVANQVGGRGLYLFAGPVGSGKTTLMYQLISSYHQEA
QVISIEDPVEIKNHQILQLQVNDDIGMTYDNLIKLSLRHRPDILVIGEIRDSQTARAVIRASLTGAMVFSTVHAKSISGV
YARLLELGVTKAELSNCLALIAYQRLLNGGALIDSTQNEFEYYSSSNWNQQIDQLLEAGHLNPKQAKLEKII

Nucleotide


Download         Length: 939 bp        

>NTDB_id=118009 STAB1101_RS00645 WP_002993471.1 102158..103096(+) (comYA) [Streptococcus pyogenes strain 7F7]
ATGGTACAAGCATTAGCAAAAGCTATTCTAGCAAAAGCTGAACAGGTTCAGGCACAAGATATTTATATTTTGCCAAGAGC
AGATCAATATGATCTTTTTTTACGAATAGGAGATGAAAGGAGATTAGTTGATGTTTATCAGAGCGATCGGATGGCTCCTC
TTATTAGTCACTTTAAATTCGTTGCAGGAATGATAGTTGGTGAAAAGAGACGTTGTCAGGTGGGTTCATGTGATTATAAG
CTTAGTAAAGATAAGCAGTTATCTTTGCGCTTATCTAGCGTGGGTGATTATCGCGGGCAAGAAAGCTTAGTGATTCGTCT
GCTTCATCATCAAAATAAAAGTGTACATTATTGGTTTGATGGATTGACAAAAGTAGCCAATCAAGTTGGCGGTAGAGGGT
TGTATTTATTTGCAGGACCAGTTGGGTCTGGGAAGACAACCTTGATGTACCAGCTGATTTCGAGTTATCATCAAGAAGCA
CAGGTTATTAGTATAGAAGATCCTGTAGAAATTAAAAATCACCAGATTTTACAATTACAAGTGAATGATGATATTGGTAT
GACTTATGACAATTTGATCAAACTGTCTTTACGCCATCGACCAGATATTTTAGTTATTGGTGAGATTCGAGATAGTCAAA
CAGCAAGAGCCGTTATTAGGGCTAGTCTAACAGGTGCCATGGTTTTTTCAACGGTTCACGCTAAAAGTATCTCGGGTGTT
TATGCAAGATTGTTAGAACTTGGTGTAACGAAAGCAGAACTGTCTAATTGCTTAGCATTAATTGCTTACCAAAGGTTACT
TAATGGAGGAGCATTGATTGACTCTACTCAAAACGAATTTGAATATTATTCCTCATCGAACTGGAATCAACAAATTGATC
AGCTTCTTGAGGCAGGACATCTCAATCCCAAGCAAGCTAAGCTTGAAAAAATTATCTAG

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(9-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYA Streptococcus mutans UA159

61.736

99.679

0.615
  comYA Streptococcus mutans UA140

61.736

99.679

0.615
  comYA Streptococcus gordonii str. Challis substr. CH1

60.772

99.679

0.606
  comGA/cglA Streptococcus sobrinus strain NIDR 6715-7

60.645

99.359

0.603
  comGA/cglA/cilD Streptococcus mitis NCTC 12261

59.807

99.679

0.596
  comGA/cglA/cilD Streptococcus pneumoniae Rx1

59.164

99.679

0.59
  comGA/cglA/cilD Streptococcus pneumoniae D39

59.164

99.679

0.59
  comGA/cglA/cilD Streptococcus pneumoniae R6

59.164

99.679

0.59
  comGA/cglA/cilD Streptococcus pneumoniae TIGR4

59.164

99.679

0.59
  comGA Lactococcus lactis subsp. cremoris KW2

50.482

99.679

0.503
  comGA Latilactobacillus sakei subsp. sakei 23K

39.655

92.949

0.369

Multiple sequence alignment