Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACOFKU_RS15430 Genome accession   NZ_OZ241361
Coordinates   3310718..3311944 (-) Length   408 a.a.
NCBI ID   WP_419813035.1    Uniprot ID   -
Organism   MAG: Bacterioplanoides sp. isolate a8483998-2d78-4028-8a03-01e39642ae96     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3305718..3316944
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACOFKU_RS15400 - 3305746..3306417 (+) 672 WP_419813029.1 transglutaminase-like cysteine peptidase -
  ACOFKU_RS15405 - 3306430..3308433 (+) 2004 WP_419813030.1 EAL domain-containing protein -
  ACOFKU_RS15410 - 3308532..3308969 (+) 438 WP_419813031.1 copper chaperone PCu(A)C -
  ACOFKU_RS15415 yacG 3309003..3309191 (-) 189 WP_419813032.1 DNA gyrase inhibitor YacG -
  ACOFKU_RS15420 coaE 3309188..3309805 (-) 618 WP_419813033.1 dephospho-CoA kinase -
  ACOFKU_RS15425 - 3309821..3310717 (-) 897 WP_419813034.1 prepilin peptidase -
  ACOFKU_RS15430 pilC 3310718..3311944 (-) 1227 WP_419813035.1 type II secretion system F family protein Machinery gene
  ACOFKU_RS15435 pilB 3311984..3313681 (-) 1698 WP_419813036.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACOFKU_RS15440 - 3313793..3314287 (-) 495 WP_419813037.1 pilin -
  ACOFKU_RS15445 nadC 3314521..3315369 (-) 849 WP_419813038.1 carboxylating nicotinate-nucleotide diphosphorylase -
  ACOFKU_RS15450 - 3315509..3316885 (-) 1377 WP_419813039.1 alanine/glycine:cation symporter family protein -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44405.12 Da        Isoelectric Point: 9.0418

>NTDB_id=1170835 ACOFKU_RS15430 WP_419813035.1 3310718..3311944(-) (pilC) [MAG: Bacterioplanoides sp. isolate a8483998-2d78-4028-8a03-01e39642ae96]
MAKPAKNSSFVWEGTNKRGQTVKGEMPNQNAAMVKVQLRKQGVTPLKVKKKTEPLFGIGGERKKPIKSADITFFVRQMAT
MIKAGVPLVQSFEIVADGVDNASMKALIFELRDTVSAGNDFASALKQHPMHFDELTCNLVEAGEQAGALETMLDKVAIYK
EKTEALRSKIKKATMYPTITLAIAAIVTVILLVKVVPTFEAMFNNFGSELPAPTQFVVALSEYAQAYYLEFLGLVIIAIT
GFTQAKKRSPAFRESVERLTLKLPLFGELTRKSAVARYARVLSTTFAAGVPLVEALQSVAGAVGNVVYKDAVLKIRDEVA
TGQQMHFAMKTTGVFPNMVIQMTSIGEESGALDAMLDKAASYFEQEVDDMVDGLTSMMEPMIMAFLGVVIGGLVVAMYLP
IFQMGDVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=1170835 ACOFKU_RS15430 WP_419813035.1 3310718..3311944(-) (pilC) [MAG: Bacterioplanoides sp. isolate a8483998-2d78-4028-8a03-01e39642ae96]
ATGGCAAAACCCGCAAAAAACAGCAGCTTTGTCTGGGAAGGGACCAACAAGCGCGGCCAGACCGTTAAAGGTGAGATGCC
AAACCAAAACGCGGCCATGGTCAAAGTCCAACTGCGTAAACAAGGCGTAACTCCACTCAAAGTCAAAAAGAAAACTGAGC
CGTTATTTGGTATTGGTGGAGAACGTAAAAAGCCGATTAAATCAGCCGACATCACTTTTTTTGTACGCCAGATGGCAACC
ATGATTAAGGCCGGTGTACCACTGGTTCAATCCTTTGAAATTGTGGCCGACGGTGTCGATAACGCGTCGATGAAAGCATT
GATTTTTGAACTGAGAGATACCGTATCCGCCGGTAATGATTTTGCCTCCGCTCTAAAGCAACACCCAATGCATTTTGATG
AACTAACTTGTAACTTGGTTGAAGCCGGTGAGCAAGCCGGTGCTCTGGAAACCATGCTAGATAAGGTGGCTATCTACAAA
GAAAAAACAGAAGCCCTACGCAGTAAAATCAAAAAAGCCACTATGTACCCGACGATAACTCTTGCCATTGCTGCAATTGT
TACAGTTATTTTATTGGTTAAAGTGGTTCCCACATTTGAAGCTATGTTCAATAACTTTGGCTCTGAATTGCCTGCGCCGA
CTCAGTTTGTCGTAGCACTTTCGGAATATGCACAAGCTTATTATTTGGAATTCTTAGGCTTAGTGATCATCGCTATCACC
GGGTTCACACAGGCAAAAAAACGCTCTCCTGCGTTTCGTGAAAGCGTTGAGAGATTGACTTTGAAACTGCCACTTTTCGG
TGAACTGACTCGCAAAAGTGCCGTTGCTCGTTATGCCCGAGTATTATCAACCACTTTTGCGGCAGGTGTACCTCTAGTGG
AAGCATTACAATCAGTCGCAGGTGCAGTCGGTAATGTCGTTTATAAAGATGCAGTGTTAAAAATTCGCGATGAGGTAGCA
ACAGGCCAACAAATGCATTTCGCAATGAAAACTACAGGAGTTTTCCCCAATATGGTGATTCAAATGACCAGCATTGGTGA
AGAGTCAGGTGCCTTAGATGCCATGCTGGACAAAGCCGCTAGCTATTTTGAGCAAGAGGTCGATGACATGGTAGATGGAC
TTACATCAATGATGGAGCCTATGATTATGGCCTTTTTAGGTGTTGTAATCGGCGGCCTTGTTGTTGCTATGTACCTGCCA
ATCTTCCAGATGGGTGATGTTGTCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

58.128

99.51

0.578
  pilC Acinetobacter baumannii D1279779

56.75

98.039

0.556
  pilC Acinetobacter baylyi ADP1

55.639

97.794

0.544
  pilC Legionella pneumophila strain ERS1305867

51.597

99.755

0.515
  pilG Neisseria gonorrhoeae MS11

44.059

99.02

0.436
  pilG Neisseria meningitidis 44/76-A

43.812

99.02

0.434
  pilC Vibrio cholerae strain A1552

41.235

99.265

0.409
  pilC Vibrio campbellii strain DS40M4

38.806

98.529

0.382

Multiple sequence alignment