Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACOCLE_RS00810 Genome accession   NZ_OZ239981
Coordinates   167878..169098 (-) Length   406 a.a.
NCBI ID   WP_419535114.1    Uniprot ID   -
Organism   MAG: Endozoicomonas sp. isolate 83fe6ec3-ea9b-4b46-8e1a-20fbcf80582c     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 162878..174098
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACOCLE_RS00790 - 162995..163651 (-) 657 WP_066017716.1 porin -
  ACOCLE_RS00795 - 164273..165190 (+) 918 WP_419535111.1 TAXI family TRAP transporter solute-binding subunit -
  ACOCLE_RS00800 - 165274..167163 (+) 1890 WP_419535112.1 TRAP transporter permease -
  ACOCLE_RS00805 - 167236..167793 (+) 558 WP_419535113.1 nuclear transport factor 2 family protein -
  ACOCLE_RS00810 pilC 167878..169098 (-) 1221 WP_419535114.1 type II secretion system F family protein Machinery gene
  ACOCLE_RS00815 - 169244..170047 (-) 804 WP_419535115.1 symmetrical bis(5'-nucleosyl)-tetraphosphatase -
  ACOCLE_RS00820 rsmA 170088..170888 (-) 801 WP_419535116.1 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA -
  ACOCLE_RS00825 pdxA 171031..172056 (-) 1026 WP_419535117.1 4-hydroxythreonine-4-phosphate dehydrogenase PdxA -
  ACOCLE_RS00830 - 172058..173413 (-) 1356 WP_419535118.1 peptidylprolyl isomerase -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 43439.02 Da        Isoelectric Point: 8.3641

>NTDB_id=1170724 ACOCLE_RS00810 WP_419535114.1 167878..169098(-) (pilC) [MAG: Endozoicomonas sp. isolate 83fe6ec3-ea9b-4b46-8e1a-20fbcf80582c]
MAAKPTKIVTFVWQGKDKSGRKTKGEMQSSSIALVKAELRKQGIVATKVGKKPPSLGLGGGGKIKPLDIALFTRQMATMM
KAGVPLLNAFDITAEGIEKESMRDLVGKIKNEVAGGSTFADSLKKHPDYFDDLYCSLVASGEQSGALETLLDRIATYKEK
TEALKAKIKKAMNYPIAVVCVAMIVTIILLVKVVPQFEEVFAGFGAELPAFTQIVINISEAVQNYWYFALGGLVTFGFLA
KRTLKSSKAARDAVDRLVLKLPIIGEILDKSAVARFGRTLATTFAAGVPLVDALDSVAGAAGNVVYAEATQKIKEDVSTG
QQLQFAMKSSGIFPAMAVQMVSIGEESGALDEMLEKVATFYEDEVDNMVDGLTSLMEPIIMSVLGVLVGGLIVAMYLPIF
QMGSVV

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=1170724 ACOCLE_RS00810 WP_419535114.1 167878..169098(-) (pilC) [MAG: Endozoicomonas sp. isolate 83fe6ec3-ea9b-4b46-8e1a-20fbcf80582c]
ATGGCCGCAAAACCAACTAAAATAGTCACTTTTGTCTGGCAGGGGAAAGACAAATCCGGCCGAAAGACTAAAGGTGAAAT
GCAAAGCTCCAGTATTGCGCTGGTTAAAGCTGAACTCAGAAAACAAGGTATCGTAGCCACAAAGGTTGGAAAGAAGCCTC
CCTCTCTTGGCCTGGGAGGGGGCGGTAAGATAAAACCATTGGATATTGCCCTATTTACCCGGCAAATGGCCACCATGATG
AAAGCTGGCGTTCCCCTCCTTAATGCTTTTGATATTACCGCTGAAGGGATTGAAAAAGAGTCAATGCGAGACCTTGTCGG
CAAAATTAAGAATGAAGTAGCCGGCGGAAGTACATTTGCTGATTCACTAAAGAAACACCCGGATTACTTTGATGACCTGT
ACTGCAGCCTTGTCGCTTCTGGAGAACAGTCCGGTGCACTGGAGACACTGCTTGATCGCATAGCTACCTACAAAGAAAAA
ACTGAAGCATTAAAGGCCAAAATCAAAAAAGCAATGAACTACCCCATTGCGGTAGTGTGCGTAGCCATGATTGTGACGAT
CATCTTGCTGGTTAAGGTGGTTCCACAATTTGAGGAGGTTTTTGCAGGTTTTGGTGCTGAGCTACCCGCATTTACACAGA
TTGTCATCAATATTTCAGAGGCCGTCCAGAATTACTGGTATTTTGCCCTGGGAGGACTTGTCACTTTTGGCTTCCTGGCC
AAACGAACACTGAAATCTTCTAAAGCTGCCAGAGACGCAGTGGACCGTCTGGTTTTAAAGCTGCCTATCATAGGGGAAAT
ACTGGATAAATCTGCCGTGGCCCGATTTGGTAGAACATTGGCCACTACATTTGCTGCAGGCGTTCCGTTGGTAGATGCTC
TTGATTCTGTAGCAGGTGCCGCTGGTAACGTAGTATATGCAGAAGCAACCCAGAAAATTAAAGAAGATGTCTCTACCGGG
CAGCAATTGCAGTTTGCCATGAAAAGCTCTGGAATTTTCCCGGCCATGGCAGTCCAGATGGTATCAATCGGTGAAGAGTC
TGGTGCCTTGGATGAGATGCTTGAGAAAGTGGCCACTTTTTACGAAGATGAAGTCGATAATATGGTTGATGGCCTGACCA
GCCTTATGGAACCCATCATTATGTCAGTGTTGGGCGTGCTTGTTGGTGGCTTGATTGTTGCTATGTACTTGCCAATTTTC
CAGATGGGTTCCGTTGTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)

Type II secretion system (T2SS), protein F (T2SSF)

(278-398)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

69.951

100

0.7
  pilC Acinetobacter baylyi ADP1

61.22

100

0.618
  pilC Acinetobacter baumannii D1279779

59.804

100

0.601
  pilC Legionella pneumophila strain ERS1305867

56.716

99.015

0.562
  pilG Neisseria gonorrhoeae MS11

45.363

98.276

0.446
  pilG Neisseria meningitidis 44/76-A

44.75

98.522

0.441
  pilC Vibrio cholerae strain A1552

43.358

98.276

0.426
  pilC Vibrio campbellii strain DS40M4

41.31

97.783

0.404
  pilC Thermus thermophilus HB27

37.5

98.522

0.369

Multiple sequence alignment