Detailed information    

insolico Bioinformatically predicted

Overview


Name   htrA   Type   Regulator
Locus tag   ACLV7A_RS09930 Genome accession   NZ_OZ217344
Coordinates   2082516..2083697 (+) Length   393 a.a.
NCBI ID   WP_050242853.1    Uniprot ID   -
Organism   Streptococcus mitis isolate S. mitis E22     
Function   repress competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 2077516..2088697
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLV7A_RS09890 (SMIE22_19800) - 2078568..2079110 (+) 543 WP_001158275.1 TetR/AcrR family transcriptional regulator -
  ACLV7A_RS09905 (SMIE22_19830) comE 2079353..2080105 (-) 753 WP_000866065.1 competence system response regulator transcription factor ComE Regulator
  ACLV7A_RS09910 (SMIE22_19840) comD/comD2 2080102..2081427 (-) 1326 WP_050242851.1 competence system sensor histidine kinase ComD Regulator
  ACLV7A_RS09915 (SMIE22_19850) comC/comC1 2081448..2081573 (-) 126 WP_000799687.1 competence-stimulating peptide ComC Regulator
  ACLV7A_RS09925 (SMIE22_19870) rlmH 2081854..2082333 (-) 480 WP_411864199.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  ACLV7A_RS09930 (SMIE22_19880) htrA 2082516..2083697 (+) 1182 WP_050242853.1 S1C family serine protease Regulator
  ACLV7A_RS09935 (SMIE22_19890) spo0J 2083755..2084513 (+) 759 WP_050252627.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence


Protein


Download         Length: 393 a.a.        Molecular weight: 41614.40 Da        Isoelectric Point: 6.1475

>NTDB_id=1170324 ACLV7A_RS09930 WP_050242853.1 2082516..2083697(+) (htrA) [Streptococcus mitis isolate S. mitis E22]
MKHLKTFYKKGFQLLVVIVISFFSGALGSFSIAQLTQKSSVSNSNNNSTITQTAYKNENSTTQAVNKVKDAVVSVITYSA
NRQNSVFGNDDTDTDSQQISSEGSGVIYKKNDKEAYIVTNNHVINGASKVDIRLSDGTKVPGEIVGADTFSDIAVVKISS
EKVTTVAEFGDSSKLTVGETAIAIGSPLGSEYANTVTQGIVSSLNRNVSLKSEDGQAISTKAIQTDTAINPGNSGGPLIN
IQGQVIGITSSKIATNGGTSVEGLGFAIPANDAINIIEQLEKNGKVTRPALGIQMVNLSNISTSDIRRLNIPSNVTSGVV
VRSVQSNMPANGHLEKYDVITKVDDKDIASSTDLQSALYNHSIGDTIKITYYRNGKEETTSIKLDKSSGDLES

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=1170324 ACLV7A_RS09930 WP_050242853.1 2082516..2083697(+) (htrA) [Streptococcus mitis isolate S. mitis E22]
ATGAAACATTTAAAAACATTTTACAAAAAAGGGTTTCAATTATTAGTCGTTATCGTCATTAGCTTTTTTAGTGGAGCCTT
GGGTAGTTTTTCAATAGCTCAACTAACTCAAAAAAGTAGTGTAAGCAACTCTAATAACAATAGCACCATTACACAGACTG
CCTATAAGAACGAAAATTCAACAACACAGGCTGTTAACAAAGTAAAAGATGCTGTTGTTTCCGTTATTACTTATTCAGCA
AACAGACAAAATAGCGTATTTGGCAATGATGATACTGACACAGATTCTCAGCAAATCTCTAGTGAAGGATCTGGAGTTAT
TTATAAAAAGAATGATAAAGAAGCTTACATCGTCACCAACAATCACGTTATAAATGGCGCCAGCAAAGTAGATATTCGAT
TGTCAGATGGAACTAAAGTACCTGGAGAAATCGTCGGAGCGGACACTTTCTCTGATATTGCTGTCGTCAAAATCTCTTCA
GAAAAAGTGACAACAGTAGCTGAGTTTGGTGATTCTAGCAAGTTAACCGTAGGAGAAACTGCTATTGCCATTGGTAGCCC
GTTAGGTTCTGAATATGCAAATACTGTCACTCAAGGTATCGTATCTAGTCTCAATCGAAATGTATCCTTAAAATCTGAAG
ATGGACAAGCCATTTCTACAAAAGCCATCCAAACTGATACTGCTATTAACCCAGGTAACTCTGGTGGCCCACTGATCAAT
ATTCAAGGACAGGTTATCGGAATTACCTCAAGTAAAATTGCCACAAATGGAGGAACATCTGTAGAGGGTCTTGGTTTCGC
AATTCCTGCAAATGATGCTATCAATATTATTGAACAGTTAGAAAAGAACGGAAAAGTGACGCGTCCAGCTTTGGGAATCC
AGATGGTTAATTTATCTAATATAAGTACAAGCGACATCAGAAGACTCAATATTCCAAGTAATGTTACATCTGGCGTAGTT
GTTCGTTCTGTACAAAGTAATATGCCTGCCAATGGTCACCTCGAAAAATACGATGTGATTACAAAAGTGGATGATAAAGA
TATTGCTTCATCAACAGACTTACAAAGTGCTCTTTACAATCATTCTATCGGAGACACCATTAAGATTACTTACTATCGTA
ACGGTAAAGAAGAAACTACATCCATCAAGCTTGACAAGAGTTCAGGTGATTTAGAATCTTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  htrA Streptococcus mitis NCTC 12261

98.473

100

0.985

  htrA Streptococcus pneumoniae D39

97.964

100

0.98

  htrA Streptococcus pneumoniae R6

97.964

100

0.98

  htrA Streptococcus pneumoniae Rx1

97.964

100

0.98

  htrA Streptococcus pneumoniae TIGR4

97.964

100

0.98

  htrA Streptococcus gordonii str. Challis substr. CH1

66.414

100

0.669

  htrA Streptococcus mutans UA159

54.822

100

0.55


Multiple sequence alignment