Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   ACLV7Z_RS02005 Genome accession   NZ_OZ217343
Coordinates   368691..370679 (+) Length   662 a.a.
NCBI ID   WP_218774184.1    Uniprot ID   -
Organism   Streptococcus mitis isolate S. mitis G22     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 363691..375679
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLV7Z_RS01985 (SMIG22_03860) - 364104..364937 (+) 834 WP_218774187.1 carbohydrate ABC transporter permease -
  ACLV7Z_RS01990 (SMIG22_03870) gtfA 365258..366700 (+) 1443 WP_218774186.1 sucrose phosphorylase -
  ACLV7Z_RS01995 (SMIG22_03880) - 366838..368031 (+) 1194 WP_218774185.1 O-antigen ligase family protein -
  ACLV7Z_RS02000 - 368422..368619 (-) 198 WP_411882187.1 hypothetical protein -
  ACLV7Z_RS02005 (SMIG22_03890) amiA3 368691..370679 (+) 1989 WP_218774184.1 peptide ABC transporter substrate-binding protein Regulator
  ACLV7Z_RS02010 (SMIG22_03900) amiC 370746..372242 (+) 1497 WP_112443790.1 ABC transporter permease Regulator
  ACLV7Z_RS02015 (SMIG22_03910) amiD 372242..373168 (+) 927 WP_000103703.1 oligopeptide ABC transporter permease OppC Regulator
  ACLV7Z_RS02020 (SMIG22_03920) amiE 373177..374244 (+) 1068 WP_218774183.1 ABC transporter ATP-binding protein Regulator
  ACLV7Z_RS02025 (SMIG22_03930) amiF 374255..375181 (+) 927 WP_125423341.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 662 a.a.        Molecular weight: 72542.92 Da        Isoelectric Point: 4.9385

>NTDB_id=1170188 ACLV7Z_RS02005 WP_218774184.1 368691..370679(+) (amiA3) [Streptococcus mitis isolate S. mitis G22]
MKKSQVLAVAGATLLASGVLAACSNTSSSNAKLAKDYQYVYQTDPETLDYIVSNIDSTSFITTNAVDGLLANDKYGNLVP
SIAESWTVSKDGLTYTYKIRKDAKWVTAEGEEYAPVTAKDFVTGLKHAVDGKSKGLSIVSSSIKGLEAYIKGETSDFSTV
GVKALDDQTLEYTLNQPETFWNDKTTSGVLMPVNEEFLASKGEGFGAPTDANSILYNGPFVLKAVTPKSSIEMAKNDAYW
DKENVKIENVKFTFWDGKDQDVIAKGFSDGQYSKARIFPTSSTYEKYAADFKDNIYFNEPGAGVATVSLNYGRTSYNHTA
KTSDAQKTSTQKALLNKEFRQALNFAVDRNSYSAQTNGTDGAAVAIRNTFAPYNLQVGKKTFGELVQESLAKTNSSTWAK
VSLADSQNGLYNEEKAKEVFAKAKSSLQAEGVEFPIHLDALVIQESTAVVNRVQSLKQSIEKVLGSDNVVVDLQQMTQAE
ALPISFSAPTAKEQDWDIHTLLGWNPDYQDPSTFLDQFVIKGGNTRLYLGIDQNTDASVVSKLALADYGKLLDDANSENQ
DVQKRYEKYAVAQAWLTDNALTIPVMASPKETAVSYVSKVLPFSSSYSESGLKGENSGYLKYTEVGEKAITKEEYEKARE
KWLKEKAESNEKAQKELASHVK

Nucleotide


Download         Length: 1989 bp        

>NTDB_id=1170188 ACLV7Z_RS02005 WP_218774184.1 368691..370679(+) (amiA3) [Streptococcus mitis isolate S. mitis G22]
ATGAAAAAAAGTCAAGTGCTTGCTGTAGCAGGAGCTACCTTATTAGCGTCAGGAGTTCTAGCTGCGTGTTCAAACACTAG
TTCAAGTAATGCTAAACTAGCAAAAGATTACCAATATGTTTATCAAACAGATCCAGAAACTTTGGATTATATTGTCAGCA
ATATCGATTCAACATCATTCATCACAACAAATGCTGTAGATGGTTTGTTGGCTAATGATAAATATGGTAATCTAGTTCCT
TCTATTGCTGAATCATGGACAGTTTCAAAAGATGGTTTGACTTATACCTATAAAATCCGTAAGGATGCTAAATGGGTAAC
TGCAGAAGGAGAAGAGTATGCTCCTGTCACTGCTAAAGACTTTGTCACTGGTTTGAAACATGCGGTAGATGGAAAATCAA
AAGGACTTTCAATCGTTAGCTCTTCTATTAAAGGATTAGAAGCATACATCAAGGGTGAAACAAGTGATTTTTCAACTGTT
GGAGTAAAAGCACTTGATGATCAAACACTAGAGTATACCTTGAACCAGCCAGAAACTTTCTGGAATGACAAGACCACTAG
TGGTGTTTTGATGCCAGTTAATGAAGAATTCTTAGCTTCAAAAGGGGAAGGTTTTGGTGCCCCAACAGATGCTAACTCTA
TTCTTTATAACGGTCCATTTGTCTTGAAGGCTGTAACTCCTAAATCATCTATCGAGATGGCTAAAAATGACGCTTACTGG
GATAAAGAAAATGTAAAAATTGAGAACGTTAAGTTCACTTTCTGGGATGGTAAGGATCAAGATGTAATTGCCAAAGGTTT
TTCTGATGGTCAATATAGCAAGGCTCGTATCTTCCCTACAAGTTCTACATATGAAAAATATGCAGCTGACTTCAAAGATA
ACATTTACTTTAATGAACCAGGTGCGGGTGTTGCAACTGTCAGCTTGAACTATGGCCGTACAAGTTATAACCACACTGCC
AAAACAAGTGATGCCCAAAAGACATCTACTCAAAAAGCTTTGCTAAATAAGGAGTTCCGTCAAGCCTTGAACTTTGCGGT
CGATCGCAATTCTTACTCAGCTCAAACAAATGGTACTGATGGAGCTGCAGTAGCCATCCGTAATACATTTGCACCATATA
ATCTTCAAGTTGGTAAGAAAACATTTGGTGAATTGGTACAAGAAAGCTTGGCTAAGACAAATTCTTCTACTTGGGCTAAG
GTTTCTCTAGCTGATTCTCAAAATGGACTCTACAATGAAGAAAAAGCGAAAGAAGTCTTTGCTAAAGCTAAATCAAGCCT
ACAAGCTGAAGGTGTTGAATTCCCAATCCACTTGGATGCCTTGGTTATCCAAGAATCAACAGCGGTTGTAAACCGTGTTC
AATCATTGAAACAATCAATTGAAAAAGTATTGGGTTCAGATAATGTTGTTGTAGACTTGCAACAAATGACTCAAGCAGAA
GCTTTACCAATTTCATTTAGTGCTCCAACAGCTAAAGAGCAAGATTGGGATATCCACACCTTGCTAGGATGGAATCCTGA
CTATCAAGATCCTTCTACTTTCTTGGATCAGTTTGTCATCAAGGGAGGAAACACTCGCCTTTACCTTGGTATTGACCAAA
ACACTGATGCATCAGTAGTAAGCAAACTTGCTTTAGCTGACTATGGAAAATTACTTGATGATGCAAACAGCGAAAACCAA
GATGTTCAAAAACGTTATGAAAAATACGCGGTAGCACAAGCTTGGTTGACTGACAATGCTTTGACAATTCCAGTAATGGC
TTCTCCTAAAGAAACAGCTGTTTCATATGTTTCAAAAGTGCTACCATTTAGCTCATCATATTCTGAATCTGGTCTTAAAG
GTGAAAATTCAGGATACTTGAAGTACACTGAAGTTGGTGAAAAAGCAATCACCAAAGAAGAGTATGAAAAAGCTCGTGAA
AAATGGTTGAAAGAAAAAGCTGAATCAAATGAGAAAGCTCAAAAAGAATTGGCAAGTCATGTGAAGTAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(78-524)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

54.669

100

0.548
  amiA3 Streptococcus thermophilus LMG 18311

54.367

100

0.545
  amiA Streptococcus salivarius strain HSISS4

53.916

100

0.541

Multiple sequence alignment