Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   ACLV7Z_RS02015 Genome accession   NZ_OZ217343
Coordinates   372242..373168 (+) Length   308 a.a.
NCBI ID   WP_000103703.1    Uniprot ID   -
Organism   Streptococcus mitis isolate S. mitis G22     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 367242..378168
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLV7Z_RS02000 - 368422..368619 (-) 198 WP_411882187.1 hypothetical protein -
  ACLV7Z_RS02005 (SMIG22_03890) amiA3 368691..370679 (+) 1989 WP_218774184.1 peptide ABC transporter substrate-binding protein Regulator
  ACLV7Z_RS02010 (SMIG22_03900) amiC 370746..372242 (+) 1497 WP_112443790.1 ABC transporter permease Regulator
  ACLV7Z_RS02015 (SMIG22_03910) amiD 372242..373168 (+) 927 WP_000103703.1 oligopeptide ABC transporter permease OppC Regulator
  ACLV7Z_RS02020 (SMIG22_03920) amiE 373177..374244 (+) 1068 WP_218774183.1 ABC transporter ATP-binding protein Regulator
  ACLV7Z_RS02025 (SMIG22_03930) amiF 374255..375181 (+) 927 WP_125423341.1 ATP-binding cassette domain-containing protein Regulator
  ACLV7Z_RS02030 (SMIG22_03940) - 375596..376474 (-) 879 WP_218774182.1 LysR family transcriptional regulator -
  ACLV7Z_RS02035 (SMIG22_03950) - 376602..376952 (-) 351 WP_000208712.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34642.72 Da        Isoelectric Point: 9.8044

>NTDB_id=1170190 ACLV7Z_RS02015 WP_000103703.1 372242..373168(+) (amiD) [Streptococcus mitis isolate S. mitis G22]
MSTIDKEKFQFVKRDDFASETIDAPAYSYWKSVFRQFMKKKSTVVMLGILVAIILMSFIYPMFSKFDFNDVSKVNDFSAR
YIKPNAEHWFGTDSNGKSLFDGVWFGARNSILISVIATVINLVIGVFVGGIWGISKSVDRVMMEVYNVISNIPSLLIVIV
LTYSIGAGFWNLIFAMSVTTWIGIAFMIRVQILRYRDLEYNLASRTLGTPTLKIVAKNIMPQLVSVIVTTMTQMLPSFIS
YEAFLSFFGLGLPITVPSLGRLISDYSQNVTTNAYLFWIPLTTLVLVSLSLFVVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=1170190 ACLV7Z_RS02015 WP_000103703.1 372242..373168(+) (amiD) [Streptococcus mitis isolate S. mitis G22]
ATGTCTACAATCGATAAAGAAAAATTTCAGTTTGTAAAACGTGACGATTTTGCCTCTGAAACCATTGATGCGCCAGCATA
TTCTTACTGGAAATCAGTGTTTAGACAATTTATGAAGAAAAAATCAACTGTAGTCATGTTGGGAATCTTGGTAGCCATCA
TTTTGATGAGTTTCATCTACCCAATGTTTTCTAAGTTTGATTTCAATGATGTCAGCAAGGTAAACGACTTTAGTGCTCGT
TATATCAAGCCAAATGCTGAGCATTGGTTCGGTACAGACAGTAACGGTAAATCTCTTTTTGACGGTGTCTGGTTCGGAGC
TCGTAACTCCATCCTCATTTCTGTGATTGCGACAGTGATTAACTTGGTTATCGGTGTTTTTGTCGGTGGTATTTGGGGAA
TTTCAAAATCAGTTGACCGCGTGATGATGGAAGTTTATAACGTCATCTCAAACATCCCATCTCTTTTGATTGTCATTGTC
TTGACTTACTCAATCGGAGCTGGATTCTGGAATCTGATTTTTGCCATGAGTGTAACAACATGGATTGGGATTGCCTTCAT
GATCCGTGTGCAAATCTTGCGTTATCGTGATTTGGAATACAACTTGGCGTCACGTACTTTGGGAACACCAACCTTGAAGA
TTGTTGCCAAAAACATTATGCCACAATTGGTATCTGTTATTGTGACAACCATGACTCAAATGCTTCCAAGCTTTATCTCA
TACGAAGCCTTCTTGTCTTTCTTCGGTCTTGGATTACCAATTACAGTGCCAAGTTTGGGTCGTTTGATTTCAGATTATTC
ACAAAACGTAACAACTAATGCTTACTTGTTCTGGATTCCATTGACAACCCTTGTCTTGGTATCCTTGTCCCTTTTCGTAG
TTGGTCAAAACTTAGCGGATGCTAGTGATCCACGTACACATAGATAG

Domains

Predicted by InterproScan.

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-72)

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(124-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

83.442

100

0.834
  amiD Streptococcus thermophilus LMG 18311

82.143

100

0.821
  amiD Streptococcus thermophilus LMD-9

82.143

100

0.821

Multiple sequence alignment