Detailed information    

insolico Bioinformatically predicted

Overview


Name   amiE   Type   Regulator
Locus tag   ACLV7Z_RS02020 Genome accession   NZ_OZ217343
Coordinates   373177..374244 (+) Length   355 a.a.
NCBI ID   WP_218774183.1    Uniprot ID   -
Organism   Streptococcus mitis isolate S. mitis G22     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context


Location: 368177..379244
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLV7Z_RS02000 - 368422..368619 (-) 198 WP_411882187.1 hypothetical protein -
  ACLV7Z_RS02005 (SMIG22_03890) amiA3 368691..370679 (+) 1989 WP_218774184.1 peptide ABC transporter substrate-binding protein Regulator
  ACLV7Z_RS02010 (SMIG22_03900) amiC 370746..372242 (+) 1497 WP_112443790.1 ABC transporter permease Regulator
  ACLV7Z_RS02015 (SMIG22_03910) amiD 372242..373168 (+) 927 WP_000103703.1 oligopeptide ABC transporter permease OppC Regulator
  ACLV7Z_RS02020 (SMIG22_03920) amiE 373177..374244 (+) 1068 WP_218774183.1 ABC transporter ATP-binding protein Regulator
  ACLV7Z_RS02025 (SMIG22_03930) amiF 374255..375181 (+) 927 WP_125423341.1 ATP-binding cassette domain-containing protein Regulator
  ACLV7Z_RS02030 (SMIG22_03940) - 375596..376474 (-) 879 WP_218774182.1 LysR family transcriptional regulator -
  ACLV7Z_RS02035 (SMIG22_03950) - 376602..376952 (-) 351 WP_000208712.1 helix-turn-helix domain-containing protein -
  ACLV7Z_RS02040 (SMIG22_03960) - 377311..378936 (+) 1626 WP_218774181.1 malolactic enzyme -

Sequence


Protein


Download         Length: 355 a.a.        Molecular weight: 39623.23 Da        Isoelectric Point: 4.7541

>NTDB_id=1170191 ACLV7Z_RS02020 WP_218774183.1 373177..374244(+) (amiE) [Streptococcus mitis isolate S. mitis G22]
MTKEKNIILTARDIVVEFDVRDKVLTAIRGVSLELVEGEVLALVGESGSGKSVLTKTFTGMLEENGRIAQGSIDYRGQDL
TALSFHKDWEQIRGAKIATIFQDPMTSLDPIKTIGSQITEVIVKHQGKTAKEAKELAIDYMNKVGIPDADRRFDEYPFQY
SGGMRQRIVIAIALACRPDVLICDEPTTALDVTIQAQIIDLLKSLQNEYHFTTIFITHDLGVVASIADKVAVMYAGEIVE
YGTVEEVFYDPRHPYTWSLLSSLPQLADDKGDLYSIPGTPPSLYTDLKGDAFALRSDYAMQIDFEQKAPQFSVSETHWAK
TWLLHEDAPKVEKPAVIANLHDKIREKMGFAHLED

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=1170191 ACLV7Z_RS02020 WP_218774183.1 373177..374244(+) (amiE) [Streptococcus mitis isolate S. mitis G22]
ATGACAAAAGAAAAAAATATAATTTTGACTGCTCGCGATATTGTCGTGGAATTTGACGTTCGTGACAAAGTATTGACAGC
CATTCGCGGCGTTTCTCTTGAACTAGTTGAAGGAGAAGTATTAGCCTTGGTAGGTGAGTCAGGATCAGGAAAATCTGTTT
TGACAAAGACTTTCACAGGTATGCTCGAAGAAAATGGTCGCATTGCCCAAGGTAGTATTGACTACCGTGGTCAGGATTTG
ACAGCTTTATCTTTTCACAAGGATTGGGAACAAATTCGTGGTGCTAAGATTGCGACTATCTTCCAGGATCCAATGACTAG
TTTGGACCCAATTAAAACAATTGGTAGTCAGATTACAGAAGTTATTGTAAAACACCAAGGAAAAACAGCTAAGGAAGCAA
AAGAATTGGCCATTGACTACATGAATAAGGTTGGGATTCCAGATGCAGATAGACGTTTTGATGAATACCCATTCCAATAT
TCTGGAGGAATGCGTCAACGTATCGTTATTGCGATTGCCCTTGCCTGCCGACCTGATGTTTTGATCTGTGACGAGCCAAC
GACTGCCTTGGATGTGACTATCCAAGCACAGATTATTGATTTGCTAAAATCTTTACAAAACGAGTACCATTTCACAACAA
TCTTTATCACTCACGACCTTGGTGTGGTGGCAAGTATTGCGGATAAGGTAGCGGTTATGTATGCAGGAGAAATCGTTGAG
TATGGAACTGTTGAGGAAGTCTTCTATGACCCTCGCCATCCATATACATGGAGTCTCTTGTCTAGCTTACCTCAGCTTGC
TGATGATAAAGGGGATCTTTACTCAATCCCAGGAACACCTCCGTCACTTTATACTGACCTGAAAGGGGATGCCTTTGCCT
TGCGTTCTGACTATGCAATGCAGATTGACTTCGAACAAAAAGCTCCTCAATTCTCAGTATCAGAGACACATTGGGCTAAA
ACTTGGCTTCTTCATGAGGATGCTCCAAAAGTAGAAAAACCAGCTGTGATTGCAAATCTCCATGATAAGATCCGTGAAAA
AATGGGATTTGCCCATCTGGAAGACTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

87.324

100

0.873

  amiE Streptococcus thermophilus LMG 18311

85.634

100

0.856

  amiE Streptococcus thermophilus LMD-9

85.634

100

0.856

  oppD Streptococcus mutans UA159

54.261

99.155

0.538


Multiple sequence alignment