Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   ACLV7Z_RS02025 Genome accession   NZ_OZ217343
Coordinates   374255..375181 (+) Length   308 a.a.
NCBI ID   WP_125423341.1    Uniprot ID   -
Organism   Streptococcus mitis isolate S. mitis G22     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 369255..380181
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLV7Z_RS02010 (SMIG22_03900) amiC 370746..372242 (+) 1497 WP_112443790.1 ABC transporter permease Regulator
  ACLV7Z_RS02015 (SMIG22_03910) amiD 372242..373168 (+) 927 WP_000103703.1 oligopeptide ABC transporter permease OppC Regulator
  ACLV7Z_RS02020 (SMIG22_03920) amiE 373177..374244 (+) 1068 WP_218774183.1 ABC transporter ATP-binding protein Regulator
  ACLV7Z_RS02025 (SMIG22_03930) amiF 374255..375181 (+) 927 WP_125423341.1 ATP-binding cassette domain-containing protein Regulator
  ACLV7Z_RS02030 (SMIG22_03940) - 375596..376474 (-) 879 WP_218774182.1 LysR family transcriptional regulator -
  ACLV7Z_RS02035 (SMIG22_03950) - 376602..376952 (-) 351 WP_000208712.1 helix-turn-helix domain-containing protein -
  ACLV7Z_RS02040 (SMIG22_03960) - 377311..378936 (+) 1626 WP_218774181.1 malolactic enzyme -
  ACLV7Z_RS02045 (SMIG22_03970) - 379013..379960 (+) 948 WP_218774180.1 AEC family transporter -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34791.79 Da        Isoelectric Point: 6.3159

>NTDB_id=1170192 ACLV7Z_RS02025 WP_125423341.1 374255..375181(+) (amiF) [Streptococcus mitis isolate S. mitis G22]
MSEKLVEIKDLEISFGEGSKKFVAVKNANFFINKGETFSLVGESGSGKTTIGRAIIGLNDTSNGDIIFEGQKINGKKSRE
QAAELIRRIQMIFQDPAASLNERATVDYIISEGLYNHHLFKDEEERKEKVQNIIREVGLLAEHLTRYPHEFSGGQRQRIG
IARALVMQPDFVIADEPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGVIVEVAETEELFN
NPIHPYTQALLSAVPIPDPILERKKVLKVYDPSQHDYETDKPSMVEIRPGHYVWANQAELARYQQGLN

Nucleotide


Download         Length: 927 bp        

>NTDB_id=1170192 ACLV7Z_RS02025 WP_125423341.1 374255..375181(+) (amiF) [Streptococcus mitis isolate S. mitis G22]
ATGTCTGAAAAATTAGTAGAAATCAAAGATTTAGAAATTTCCTTCGGTGAAGGAAGTAAGAAGTTTGTCGCAGTTAAAAA
TGCTAACTTCTTTATCAACAAGGGAGAAACTTTCTCGCTTGTAGGTGAGTCAGGTAGTGGGAAAACAACCATTGGTCGTG
CTATCATCGGTCTCAATGATACAAGTAATGGTGATATTATTTTTGAGGGTCAAAAGATTAATGGTAAGAAATCGCGTGAA
CAAGCTGCGGAATTGATTCGTCGAATCCAGATGATTTTCCAAGACCCTGCTGCAAGTTTGAATGAACGTGCGACTGTTGA
TTATATTATTTCTGAAGGTCTTTACAATCATCATCTGTTCAAAGATGAAGAAGAACGTAAAGAGAAAGTTCAAAATATTA
TCCGTGAAGTGGGTCTTCTTGCTGAGCACTTGACTCGTTACCCTCATGAGTTCTCAGGTGGTCAACGTCAACGTATCGGT
ATTGCCCGTGCCTTGGTCATGCAACCAGACTTTGTTATTGCGGATGAACCCATTTCAGCCTTGGATGTTTCTGTACGTGC
CCAAGTATTGAACTTGCTTAAGAAATTCCAAAAAGAACTTGGTTTGACCTATCTCTTCATCGCCCATGACTTGTCGGTTG
TTCGCTTTATTTCAGATCGTATCGCGGTTATTTACAAGGGTGTTATTGTAGAGGTTGCAGAAACAGAAGAATTGTTTAAC
AATCCAATTCACCCATATACTCAAGCCTTGCTTTCAGCGGTACCAATTCCAGACCCAATCTTAGAACGCAAGAAGGTCTT
GAAGGTTTACGATCCAAGTCAACACGACTATGAGACTGATAAGCCATCTATGGTAGAAATCCGTCCAGGTCACTATGTTT
GGGCTAACCAAGCCGAATTGGCGCGTTACCAACAAGGGTTAAACTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(25-178)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMG 18311

85.246

99.026

0.844
  amiF Streptococcus salivarius strain HSISS4

85.246

99.026

0.844
  amiF Streptococcus thermophilus LMD-9

84.918

99.026

0.841

Multiple sequence alignment